Evidence map›Paper›PMID 27607190›Full record

ArticleWound repair and regeneration : official publication of the Wound Healing Society [and] the European Tissue Repair Society2016

Integrative analysis of miRNA and mRNA paired expression profiling of primary fibroblast derived from diabetic foot ulcers reveals multiple impaired cellular functions.

Liang Liang, Rivka C Stone, Olivera Stojadinovic, Horacio Ramirez, Irena Pastar, Anna G Maione, Avi Smith, Vanessa Yanez, Aristides Veves, Robert S Kirsner and 2 more

Open access · greenAbstract read
In one paragraph

Article in Wound repair and regeneration : official publication of the Wound Healing Society [and] the European Tissue Repair Society, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 92 citations in OpenAlex.

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  13. Molecular Morbidity Score-Can MicroRNAs Assess the Burden of Disease?International journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Liang LiangDepartment of Dermatology & Cutaneous Surgery, University of Miami Miller School of Medicine (UMMSOM), Wound Healing and Regenerative Medicine Research Program.
Rivka C StoneDepartment of Dermatology & Cutaneous Surgery, University of Miami Miller School of Medicine (UMMSOM), Wound Healing and Regenerative Medicine Research Program.
Olivera StojadinovicDepartment of Dermatology & Cutaneous Surgery, University of Miami Miller School of Medicine (UMMSOM), Wound Healing and Regenerative Medicine Research Program.
Horacio RamirezDepartment of Dermatology & Cutaneous Surgery, University of Miami Miller School of Medicine (UMMSOM), Wound Healing and Regenerative Medicine Research Program.
Irena PastarDepartment of Dermatology & Cutaneous Surgery, University of Miami Miller School of Medicine (UMMSOM), Wound Healing and Regenerative Medicine Research Program.
Anna G MaioneDepartment of Cell, Molecular, and Developmental Biology, Sackler School of Graduate Biomedical Sciences, Tufts University, Boston, Massachusetts.
Avi SmithJohn P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine (UMMSOM), Miami, Florida.
Vanessa YanezJohn P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine (UMMSOM), Miami, Florida.
Aristides VevesBeth Israel Deaconess Medical Center, Boston, Massachusetts.
Robert S KirsnerDepartment of Dermatology & Cutaneous Surgery, University of Miami Miller School of Medicine (UMMSOM), Wound Healing and Regenerative Medicine Research Program.
Jonathan A GarlickDepartment of Cell, Molecular, and Developmental Biology, Sackler School of Graduate Biomedical Sciences, Tufts University, Boston, Massachusetts.
Marjana Tomic-CanicDepartment of Dermatology & Cutaneous Surgery, University of Miami Miller School of Medicine (UMMSOM), Wound Healing and Regenerative Medicine Research Program.
University of Miami · USDr. John T. Macdonald Foundation · USTufts University · USBeth Israel Deaconess Medical Center · US

Funding

Tufts Post-Baccalaureate Research Education ProgramR25GM066567 · NIGMS · TUFTS UNIVERSITY BOSTON · PI RIOS, MARIBEL · 2002 to 2024
$5.7M
iPSC-derived Repair-Responsive Fibroblasts to Heal Diabetic Foot UlcersR01DK098055 · NIDDK · TUFTS UNIVERSITY BOSTON · PI GARLICK, JONATHAN A · 2012 to 2015
$2.6M
Micro-RNA Molecules as Regulators of Diabetic Wound HealingR01NR013881 · NINR · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI TOMIC-CANIC, MARJANA · 2012 to 2015
$1.7M
Development of the Cellular Biomarker for Diabetic Foot UlcersRC1DK086364 · NIDDK · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI BREM, HAROLD, TOMIC-CANIC, MARJANA · 2009 to 2010
$903k
NIDDK NIH HHS R01 DK098055NIDDK NIH HHS RC1 DK086364NIGMS NIH HHS R25 GM066567NINR NIH HHS R01 NR013881
6 · The paper itself

Abstract

Diabetic foot ulcers (DFUs) are one of the major complications of diabetes. Its molecular pathology remains poorly understood, impeding the development of effective treatments. Although it has been established that multiple cell types, including fibroblasts, keratinocytes, macrophages, and endothelial cells, all contribute to inhibition of healing, less is known regarding contributions of individual cell type. Thus, we generated primary fibroblasts from nonhealing DFUs and evaluated their cellular and molecular properties in comparison to nondiabetic foot fibroblasts (NFFs). Specifically, we analyzed both micro-RNA and mRNA expression profiles of primary DFU fibroblasts. Paired genomic analyses identified a total of 331 reciprocal miRNA-mRNA pairs including 21 miRNAs (FC > 2.0) along with 239 predicted target genes (FC > 1.5) that are significantly and differentially expressed. Of these, we focused on three miRNAs (miR-21-5p, miR-34a-5p, miR-145-5p) that were induced in DFU fibroblasts as most differentially regulated. The involvement of these microRNAs in wound healing was investigated by testing the expression of their downstream targets as well as by quantifying cellular behaviors in prospectively collected and generated cell lines from 15 patients (seven DFUF and eight NFF samples). We found large number of downstream targets of miR-21-5p, miR-34a-5p, miR-145-5p to be coordinately regulated in mRNA profiles, which was confirmed by quantitative real-time PCR. Pathway analysis on paired miRNA-mRNA profiles predicted inhibition of cell movement and cell proliferation, as well as activation of cell differentiation and senescence in DFU fibroblasts, which was confirmed by cellular assays. We concluded that induction of miR-21-5p, miR-34a-5p, miR-145-5p in DFU dermal fibroblasts plays an important role in impairing multiple cellular functions, thus contributing to overall inhibition of healing in DFUs.

Indexed as

Gene Expression ProfilingWound HealingBlotting, WesternCell DifferentiationCellular SenescenceDiabetic FootFibroblastsGene Expression RegulationHumansImmunohistochemistryMicroarray AnalysisMicroRNAsRNA, MessengerSignal TransductionMicroRNAsRNA, Messenger

Identifiers

PMID27607190
PMCPMC5470742
OpenAlexW2519995696

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.