Evidence map›Paper›PMID 27605715›Full record

ArticleJournal of experimental botany2016

α-Xylosidase plays essential roles in xyloglucan remodelling, maintenance of cell wall integrity, and seed germination in Arabidopsis thaliana.

Takuma Shigeyama, Asuka Watanabe, Konatsu Tokuchi, Shigeo Toh, Naoki Sakurai, Naoto Shibuya, Naoto Kawakami

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
8.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 62 citations in OpenAlex.

  1. Review
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  6. International journal of molecular sciences · 2025
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  10. The MKK3 MAPK cascade integrates temperature and after-ripening signals to modulate seed germination.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
  12. Autophagy maintains endosperm quality during seed storage to preserve germination ability in Arabidopsis.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. Frontiers in plant science · 2024
    Article
  14. Article
  15. Article
  16. Article
  17. Plants (Basel, Switzerland) · 2022
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Takuma ShigeyamaDepartment of Life Sciences, School of Agriculture, Meiji University, Higashimita 1-1-1, Tama-ku, Kawasaki 214-8571, Japan.
Asuka WatanabeDepartment of Life Sciences, School of Agriculture, Meiji University, Higashimita 1-1-1, Tama-ku, Kawasaki 214-8571, Japan.
Konatsu TokuchiDepartment of Life Sciences, School of Agriculture, Meiji University, Higashimita 1-1-1, Tama-ku, Kawasaki 214-8571, Japan.
Shigeo TohDepartment of Life Sciences, School of Agriculture, Meiji University, Higashimita 1-1-1, Tama-ku, Kawasaki 214-8571, Japan.
Naoki SakuraiGraduate School of Biosphere Science, Hiroshima University, Kagamiyama 1-3-2, Higashihiroshima 739-8528, Japan.
Naoto ShibuyaDepartment of Life Sciences, School of Agriculture, Meiji University, Higashimita 1-1-1, Tama-ku, Kawasaki 214-8571, Japan.
Naoto KawakamiDepartment of Life Sciences, School of Agriculture, Meiji University, Higashimita 1-1-1, Tama-ku, Kawasaki 214-8571, Japan kawakami@meiji.ac.jp.
Meiji University · JPHiroshima University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Regulation and maintenance of cell wall physical properties are crucial for plant growth and environmental response. In the germination process, hypocotyl cell expansion and endosperm weakening are prerequisites for dicot seeds to complete germination. We have identified the Arabidopsis mutant thermoinhibition-resistant germination 1 (trg1), which has reduced seed dormancy and insensitivity to unfavourable conditions for germination owing to a loss-of-function mutation of TRG1/XYL1, which encodes an α-xylosidase. Compared to those of wild type, the elongating stem of trg1 showed significantly lower viscoelasticity, and the fruit epidermal cells were longitudinally shorter and horizontally enlarged. Actively growing tissues of trg1 over-accumulated free xyloglucan oligosaccharides (XGOs), and the seed cell wall had xyloglucan with a greatly reduced molecular weight. These observations suggest that XGOs reduce xyloglucan size by serving as an acceptor in transglycosylation and eventually enhancing cell wall loosening. TRG1/XYL1 gene expression was abundant in growing wild-type organs and tissues but relatively low in cells at most actively elongating part of the tissues, suggesting that α-xylosidase contributes to maintaining the mechanical integrity of the primary cell wall in the growing and pre-growing tissues. In germinating seeds of trg1, expression of genes encoding specific abscisic acid and gibberellin metabolism enzymes was altered in accordance with the aberrant germination phenotype. Thus, cell wall integrity could affect seed germination not only directly through the physical properties of the cell wall but also indirectly through the regulation of hormone gene expression.

Indexed as

ArabidopsisCell WallGene Expression ProfilingGerminationGlucansPlant DormancyPlants, Genetically ModifiedReverse Transcriptase Polymerase Chain ReactionSeedsXylansXylosidasesalpha-D-xylosidaseGlucansXylansxyloglucanXylosidasesAbscisic acidcell wallgibberellinseed dormancythermoinhibitionxyloglucan oligosaccharide.

Identifiers

PMID27605715
PMCPMC5066485
OpenAlexW2508909424

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.