Evidence map›Paper›PMID 27605062›Full record

Trial reportNature communications2016

Broad activation of latent HIV-1 in vivo.

Kirston Barton, Bonnie Hiener, Anni Winckelmann, Thomas Aagaard Rasmussen, Wei Shao, Karen Byth, Robert Lanfear, Ajantha Solomon, James McMahon, Sean Harrington and 9 more

Open access · goldAbstract readClinical Trial
In one paragraph

Trial report in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
5.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 70 citations in OpenAlex.

  1. Trial
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  13. HIV-1 cure strategies: why CRISPR?Expert opinion on biological therapy · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 10 institutions in 3 countries.

Kirston BartonCentre for Virus Research, The Westmead Institute for Medical Research, The University of Sydney, 176 Hawkesbury Road, Sydney, New South Wales 2145, Australia.
Bonnie HienerCentre for Virus Research, The Westmead Institute for Medical Research, The University of Sydney, 176 Hawkesbury Road, Sydney, New South Wales 2145, Australia.
Anni WinckelmannCentre for Virus Research, The Westmead Institute for Medical Research, The University of Sydney, 176 Hawkesbury Road, Sydney, New South Wales 2145, Australia.
Thomas Aagaard RasmussenDepartment of Infectious Diseases, Aarhus University Hospital, Palle Juul Jensens Boulevard 99, Aarhus N 8200, Denmark.
Wei ShaoAdvanced Biomedical Computing Center, Leidos Biomedical Research Inc., PO Box B, Frederick, Maryland 21702, USA.
Karen BythNWSLHD Research and Education Network, Darcy Road, Westmead, NSW 2145, Australia.
Robert LanfearDepartment of Biological Sciences, Macquarie University, Sydney, New South Wales 2109, Australia.
Ajantha SolomonThe Peter Doherty Institute for Infection and Immunity, The University of Melbourne and Royal Melbourne Hospital, 792 Elizabeth Street, Melbourne, Victoria 3000, Australia.
James McMahonDepartment of Infectious Diseases, Alfred Hospital and Monash University, 55 Commercial Road, Melbourne, Victoria 3181, Australia.
Sean HarringtonRagon Institute of MGH, MIT, Harvard, 400 Technology Square, Cambridge, Massachusetts 02139, USA.
Maria BuzonRagon Institute of MGH, MIT, Harvard, 400 Technology Square, Cambridge, Massachusetts 02139, USA.
Mathias LichterfeldRagon Institute of MGH, MIT, Harvard, 400 Technology Square, Cambridge, Massachusetts 02139, USA.
Paul W DentonDepartment of Infectious Diseases, Aarhus University Hospital, Palle Juul Jensens Boulevard 99, Aarhus N 8200, Denmark.
Rikke OlesenDepartment of Infectious Diseases, Aarhus University Hospital, Palle Juul Jensens Boulevard 99, Aarhus N 8200, Denmark.
Lars ØstergaardDepartment of Infectious Diseases, Aarhus University Hospital, Palle Juul Jensens Boulevard 99, Aarhus N 8200, Denmark.
Martin TolstrupDepartment of Infectious Diseases, Aarhus University Hospital, Palle Juul Jensens Boulevard 99, Aarhus N 8200, Denmark.
Sharon R LewinThe Peter Doherty Institute for Infection and Immunity, The University of Melbourne and Royal Melbourne Hospital, 792 Elizabeth Street, Melbourne, Victoria 3000, Australia.
Ole Schmeltz SøgaardDepartment of Infectious Diseases, Aarhus University Hospital, Palle Juul Jensens Boulevard 99, Aarhus N 8200, Denmark.
Sarah PalmerCentre for Virus Research, The Westmead Institute for Medical Research, The University of Sydney, 176 Hawkesbury Road, Sydney, New South Wales 2145, Australia.
Aarhus University Hospital · DKWestmead Institute for Medical Research · AUMonash University · AUHarvard University · USLeidos (United States) · USLemuel Shattuck Hospital · USMacquarie University · AURagon Institute of MGH, MIT and Harvard · USUniversity of Melbourne · AUUniversity of Sydney · AU

Funding

Viral reservoirs and sanctuaries in HAART - treated patients: role and mechanismsU19AI096109 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PALMER, SARAH ELIZABETH · 2011 to 2015
$29.5M
TILDA: A new sensitive and precise assay to measure the size of the latent HIV reservoirR21AI113096 · NIAID · VGTI FLORIDA · PI CHOMONT, NICOLAS · 2014 to 2015
$334k
Characterization of in vivo resting CD4 T cells expressing HIV RNA in ART-treated individualsR21AI118411 · NIAID · FDN INSTITUTE/RESEARCH/VALL D'HEBRON HOS · PI BUZON, MARIA J · 2015 to 2016
$297k
NIAID NIH HHS R21 AI113096NIAID NIH HHS R21 AI118411NIAID NIH HHS U19 AI096109
6 · The paper itself

Abstract

The 'shock and kill' approach to cure human immunodeficiency virus (HIV) includes transcriptional induction of latent HIV-1 proviruses using latency-reversing agents (LRAs) with targeted immunotherapy to purge infected cells. The administration of LRAs (panobinostat or vorinostat) to HIV-1-infected individuals on antiretroviral therapy induces a significant increase in cell-associated unspliced (CA-US) HIV-1 RNA from CD4(+) T cells. However, it is important to discern whether the increases in CA-US HIV-1 RNA are due to limited or broad activation of HIV-1 proviruses. Here we use single-genome sequencing to find that the RNA transcripts observed following LRA administration are genetically diverse, indicating activation of transcription from an extensive range of proviruses. Defective sequences are more frequently found in CA HIV-1 RNA than in HIV-1 DNA, which has implications for developing an accurate measure of HIV-1 reservoir size. Our findings provide insights into the effects of panobinostat and vorinostat as LRAs for latent HIV-1.

Indexed as

AdultAnti-HIV AgentsCD4-Positive T-LymphocytesDNA, ViralDrug Administration ScheduleHIV-1HIV InfectionsHumansHydroxamic AcidsIndolesMiddle AgedPanobinostatRNA, ViralViremiaVirus LatencyVorinostatAnti-HIV AgentsDNA, ViralHydroxamic AcidsIndolesPanobinostatRNA, ViralVorinostat

Identifiers

PMID27605062
PMCPMC5025526
OpenAlexW2509017372

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.