Evidence map›Paper›PMID 27604636›Full record

ArticleAmerican journal of medical genetics. Part A2016

Autosomal and X chromosome structural variants are associated with congenital heart defects in Turner syndrome: The NHLBI GenTAC registry.

Siddharth K Prakash, Carolyn A Bondy, Cheryl L Maslen, Michael Silberbach, Angela E Lin, Laura Perrone, Giuseppe Limongelli, Hector I Michelena, Eduardo Bossone, Rodolfo Citro and 4 more

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in American journal of medical genetics. Part A, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01322165 (National Registry of Genetically Triggered Thoracic Aortic Aneurysms and Cardiovascular Conditions), which is not on this map. Cited by 34 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 2 pooled it
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01322165 completednot on this map

National Registry of Genetically Triggered Thoracic Aortic Aneurysms and Cardiovascular Conditions

TypeobservationalSponsorNational Heart, Lung, and Blood Institute (NHLBI)Ran2007 to 2016Enrolled3,706ConditionsMarfan Syndrome, Turner Syndrome, Ehlers-Danlos Syndrome, Loeys-Dietz Syndrome
3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 2 syntheses or guidelines pooled it, 64 citations in OpenAlex.

  1. X-linked genetic associations in sporadic thoracic aortic dissection.American journal of medical genetics. Part A · 2024
    Pooled it
  2. Guideline
  3. Trial
  4. Review
  5. Review
  6. Review
  7. Lifelong aortic risk in Turner syndrome: Unexpected aortic events in asymptomatic patients.Journal of vascular surgery cases and innovative techniques · 2025
    Article
  8. Article
  9. Article
  10. In-Depth Genomic Analysis: The New Challenge in Congenital Heart Disease.International journal of molecular sciences · 2024
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Genomic frontiers in congenital heart disease.Nature reviews. Cardiology · 2022
    Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 9 institutions in 2 countries.

Siddharth K PrakashDivision of Medical Genetics, Department of Internal Medicine, University of Texas Health Science Center at Houston, Houston, Texas.
Carolyn A BondyNational Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland.
Cheryl L MaslenDepartments of Molecular and Medical Genetics and Pediatrics, Oregon Health & Science University, Portland, Oregon.
Michael SilberbachDepartments of Molecular and Medical Genetics and Pediatrics, Oregon Health & Science University, Portland, Oregon.
Angela E LinDepartment of Medical Genetics, MassGeneral Hospital for Children, Boston, Massachusetts.
Laura PerroneDepartment of Pediatrics "F. Fede", Seconda Università degli Studi di Napoli, Naples, Italy.
Giuseppe LimongelliDepartment of Pediatrics "F. Fede", Seconda Università degli Studi di Napoli, Naples, Italy.
Hector I MichelenaDivision of Cardiovascular Diseases, Mayo Clinic, Rochester, Minnesota.
Eduardo BossoneDepartment of Cardiology and Cardiac Surgery, University Hospital "Scuola Medica Salernitana", Salerno, Italy.
Rodolfo CitroDepartment of Cardiology and Cardiac Surgery, University Hospital "Scuola Medica Salernitana", Salerno, Italy.
BAVCon Investigators, GenTAC Registry Investigators
Scott A LemaireDivision of Cardiothoracic Surgery, Michael E. DeBakey Department of Surgery, Baylor College of Medicine, Houston, Texas.
Simon C BodyDepartment of Anesthesiology, Perioperative and Pain Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts.
Dianna M MilewiczDivision of Medical Genetics, Department of Internal Medicine, University of Texas Health Science Center at Houston, Houston, Texas.
Brigham and Women's Hospital · USOregon Health & Science University · USThe University of Texas Health Science Center at Houston · USUniversity of Naples Federico II · ITUniversity of Salerno · ITBaylor College of Medicine · USMassachusetts General Hospital · USMayo Clinic · USNational Institutes of Health · US

Funding

HRS Yrs29-34: Y33 SSA CoFundingU01AG009740 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Jessica Faul, KENNETH M LANGA · 1990 to 2026
$555.8M
The Collaborative Genetic Study of Nicotine DependenceP01CA089392 · NCI · WASHINGTON UNIVERSITY · PI BIERUT, LAURA J. · 2001 to 2012
$17.3M
Center for Clinical and Translational Sciences (CCTS)UL1TR000371 · NCATS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MCPHERSON, DAVID D · 2012 to 2016
$13.4M
RELAPSE: LINKING SCIENCE AND PRACTICEP50CA084724 · NCI · UNIVERSITY OF WISCONSIN MADISON · PI FIORE, MICHAEL C · 1999 to 2003
$8.9M
Tobacco Dependence: Treatment and OutcomesP50DA019706 · NIDA · UNIVERSITY OF WISCONSIN-MADISON · PI JACKSON, THOMAS C · 2004 to 2008
$8.6M
Steps towards a paternal gene activation therapy for Angelman syndromeU54HD083092 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI NELSON, DAVID LOREN, NEUL, JEFFREY L · 2014 to 2019
$7.8M
Creating a National Resource for Genetic Research in Behavioral & Health SciencesRC2AG036495 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WEIR, DAVID R. · 2009 to 2010
$7.4M
Genome Wide Association Coordinating CenterU01HG004446 · NHGRI · UNIVERSITY OF WASHINGTON · PI WEIR, BRUCE S. · 2007 to 2011
$6.6M
Expanding a National Resource for Genetic Research in Behavioral & Health ScienceRC4AG039029 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WEIR, DAVID R. · 2010 to 2010
$6.0M
GENETIC STUDIES OF COMMON CONGENITAL HEART DEFECTSR01HD039056 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI BELMONT, JOHN WILLIAM · 2000 to 2004
$4.5M
Center for Clinical and Translational Sciences (CCTS)KL2TR000370 · NCATS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MCPHERSON, DAVID D · 2012 to 2016
$4.3M
A Multi-Center Study To Map Genes for Fuchs'DystrophyR01EY016482 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI IYENGAR, SUDHA K · 2005 to 2009
$3.8M
NCATS NIH HHS KL2 TR000370NCATS NIH HHS UL1 TR000371NCI NIH HHS P01 CA089392NCI NIH HHS P50 CA084724NEI NIH HHS R01 EY016482NEI NIH HHS R01 EY016514NHGRI NIH HHS HHSN268200782096CNHGRI NIH HHS U01 HG004446NHLBI NIH HHS HHSN268200648199CNHLBI NIH HHS HHSN268201000048CNHLBI NIH HHS R01 HL090506NHLBI NIH HHS R01 HL091771NHLBI NIH HHS R01 HL109758NHLBI NIH HHS R01 HL114823NIA NIH HHS RC2 AG036495NIA NIH HHS RC4 AG039029NIA NIH HHS U01 AG009740NICHD NIH HHS R01 HD039056NICHD NIH HHS U54 HD083092NIDA NIH HHS P50 DA019706
6 · The paper itself

Abstract

Turner Syndrome (TS) is a developmental disorder caused by partial or complete loss of one sex chromosome. Bicuspid aortic valve and other left-sided congenital heart lesions (LSL), including thoracic aortic aneurysms and acute aortic dissections, are 30-50 times more frequent in TS than in the general population. In 454 TS subjects, we found that LSL are significantly associated with reduced dosage of Xp genes and increased dosage of Xq genes. We also showed that genome-wide copy number variation is increased in TS and identify a common copy number variant (CNV) in chromosome 12p13.31 that is associated with LSL with an odds ratio of 3.7. This CNV contains three protein-coding genes (SLC2A3, SLC2A14, and NANOGP1) and was previously implicated in congenital heart defects in the 22q11 deletion syndrome. In addition, we identified a subset of rare and recurrent CNVs that are also enriched in non-syndromic BAV cases. These observations support our hypothesis that X chromosome and autosomal variants affecting cardiac developmental genes may interact to cause the increased prevalence of LSL in TS. © 2016 Wiley Periodicals, Inc.

Indexed as

AdultChromosomes, Human, XDNA Copy Number VariationsFemaleGene DosageGenes, X-LinkedGenotypeGlucose Transporter Type 3Glucose Transport Proteins, FacilitativeHeart Defects, CongenitalHomeodomain ProteinsHumansMaleNational Heart, Lung, and Blood Institute (U.S.)Transcription FactorsTurner SyndromeGlucose Transporter Type 3Glucose Transport Proteins, FacilitativeHomeodomain ProteinsNANOGP1 protein, humanSLC2A14 protein, humanSLC2A3 protein, humanTranscription Factorscongenital heart defectsgenomicsTurner syndromevalvular heart diseaseX chromosome

Identifiers

PMID27604636
PMCPMC5115959
OpenAlexW2509708763

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.