Evidence map›Paper›PMID 27604319›Full record

ArticleScientific reports2016

Mapping the complete glycoproteome of virion-derived HIV-1 gp120 provides insights into broadly neutralizing antibody binding.

Maria Panico, Laura Bouché, Daniel Binet, Michael-John O'Connor, Dinah Rahman, Poh-Choo Pang, Kevin Canis, Simon J North, Ronald C Desrosiers, Elena Chertova and 6 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 79 citations in OpenAlex.

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  14. Large-Scale Synthesis of ManACS infectious diseases · 2022
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1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Maria PanicoDepartment of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.
Laura BouchéDepartment of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.
Daniel BinetBioPharmaSpec, Suite 3.1 Lido Medical Centre, St. Saviours Road, Jersey, JE2 7LA, UK.
Michael-John O'ConnorBioPharmaSpec, Suite 3.1 Lido Medical Centre, St. Saviours Road, Jersey, JE2 7LA, UK.
Dinah RahmanDepartment of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.
Poh-Choo PangDepartment of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.
Kevin CanisDepartment of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.
Simon J NorthDepartment of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.
Ronald C DesrosiersDepartment of Pathology, University of Miami, Miami, Florida, 33136, USA.
Elena ChertovaAIDS and Cancer Virus Program, Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702, USA.
Brandon F KeeleAIDS and Cancer Virus Program, Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702, USA.
Julian W BessAIDS and Cancer Virus Program, Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702, USA.
Jeffrey D LifsonAIDS and Cancer Virus Program, Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702, USA.
Stuart M HaslamDepartment of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.
Anne DellDepartment of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.
Howard R MorrisDepartment of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.
Imperial College London · GBFrederick National Laboratory for Cancer Research · USLeidos (United States) · USUniversity of Miami · US

Funding

Functional Role of O-Glycosylation of HIV-1R01AI104523 · NIAID · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI DESROSIERS, RONALD C · 2013 to 2024
$4.1M
Biotechnology and Biological Sciences Research Council BB/F008309/1Biotechnology and Biological Sciences Research Council BB/K016164/1CCR NIH HHS HHSN261200800001CNCI NIH HHS HHSN261200800001ENIAID NIH HHS R01 AI104523Wellcome Trust
6 · The paper itself

Abstract

The surface envelope glycoprotein (SU) of Human immunodeficiency virus type 1 (HIV-1), gp120(SU) plays an essential role in virus binding to target CD4+ T-cells and is a major vaccine target. Gp120 has remarkably high levels of N-linked glycosylation and there is considerable evidence that this "glycan shield" can help protect the virus from antibody-mediated neutralization. In recent years, however, it has become clear that gp120 glycosylation can also be included in the targets of recognition by some of the most potent broadly neutralizing antibodies. Knowing the site-specific glycosylation of gp120 can facilitate the rational design of glycopeptide antigens for HIV vaccine development. While most prior studies have focused on glycan analysis of recombinant forms of gp120, here we report the first systematic glycosylation site analysis of gp120 derived from virions produced by infected T lymphoid cells and show that a single site is exclusively substituted with complex glycans. These results should help guide the design of vaccine immunogens.

Indexed as

Amino Acid SequenceAntibodies, NeutralizingAntigen-Antibody ReactionsBinding SitesCarbohydrate SequenceCell LineGenome, ViralGlycosylationHIV-1HIV AntibodiesHIV Envelope Protein gp120HumansOligosaccharidesPolysaccharidesProtein BindingProtein Structure, SecondaryAntibodies, Neutralizinggp120 protein, Human immunodeficiency virus 1HIV AntibodiesHIV Envelope Protein gp120oligomannosideOligosaccharidesPolysaccharidesProteome

Identifiers

PMID27604319
PMCPMC5015092
OpenAlexW2517801085

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.