Evidence map›Paper›PMID 27604083›Full record

ArticleBMC genomics2016

High throughput techniques to reveal the molecular physiology and evolution of digestion in spiders.

Felipe J Fuzita, Martijn W H Pinkse, José S L Patane, Peter D E M Verhaert, Adriana R Lopes

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Exploring Spiders Without Venom as New Sources of Peptidase Inhibitors.International journal of molecular sciences · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Toxinology in the proteomics era: a review on arachnid venom proteomics.The journal of venomous animals and toxins including tropical diseases · 2022
    Article
  13. Linking toxicity and predation in a venomous arthropod: the case ofThe journal of venomous animals and toxins including tropical diseases · 2022
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Venomics: A Mini-Review.High-throughput · 2018
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Felipe J FuzitaLaboratory of Biochemistry and Biophysics, Instituto Butantan, São Paulo, 05503-000, Brazil.
Martijn W H PinkseLaboratory of Analytical Biotechnology and Innovative Peptide Biology, Delft University of Technology, Delft, The Netherlands.
José S L PataneDepartment of Biochemistry, Institute of Chemistry, University of São Paulo, São Paulo, Brazil.
Peter D E M VerhaertLaboratory of Analytical Biotechnology and Innovative Peptide Biology, Delft University of Technology, Delft, The Netherlands.
Adriana R LopesLaboratory of Biochemistry and Biophysics, Instituto Butantan, São Paulo, 05503-000, Brazil. adriana.lopes@butantan.gov.br.
Delft University of Technology · NLInstituto Butantan · BRUniversidade de São Paulo · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSpiders are known for their predatory efficiency and for their high capacity of digesting relatively large prey. They do this by combining both extracorporeal and intracellular digestion. Whereas many high throughput ("-omics") techniques focus on biomolecules in spider venom, so far this approach has not yet been applied to investigate the protein composition of spider midgut diverticula (MD) and digestive fluid (DF).

resultsWe here report on our investigations of both MD and DF of the spider Nephilingis (Nephilengys) cruentata through the use of next generation sequencing and shotgun proteomics. This shows that the DF is composed of a variety of hydrolases including peptidases, carbohydrases, lipases and nuclease, as well as of toxins and regulatory proteins. We detect 25 astacins in the DF. Phylogenetic analysis of the corresponding transcript(s) in Arachnida suggests that astacins have acquired an unprecedented role for extracorporeal digestion in Araneae, with different orthologs used by each family. The results of a comparative study of spiders in distinct physiological conditions allow us to propose some digestion mechanisms in this interesting animal taxon.

conclusionAll the high throughput data allowed the demonstration that DF is a secretion originating from the MD. We identified enzymes involved in the extracellular and intracellular phases of digestion. Besides that, data analyses show a large gene duplication event in Araneae digestive process evolution, mainly of astacin genes. We were also able to identify proteins expressed and translated in the digestive system, which until now had been exclusively associated to venom glands.

Indexed as

DigestionAnimalsArthropod ProteinsDigestive SystemEvolution, MolecularGene DuplicationGene Expression RegulationHigh-Throughput Nucleotide SequencingMetalloendopeptidasesPhylogenyProteomicsSequence Analysis, DNASpidersArthropod ProteinsastacinMetalloendopeptidasesArachnidaAstacinDigestionEnzymeHigh throughput (-omics) techniquesNephilingis (Nephilengys cruentata)Spider

Identifiers

PMID27604083
PMCPMC5013568
OpenAlexW2512709429

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.