Evidence map›Paper›PMID 27603779›Full record

ArticlePloS one2016

Demonstration of Protein-Based Human Identification Using the Hair Shaft Proteome.

Glendon J Parker, Tami Leppert, Deon S Anex, Jonathan K Hilmer, Nori Matsunami, Lisa Baird, Jeffery Stevens, Krishna Parsawar, Blythe P Durbin-Johnson, David M Rocke and 8 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
16.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 147 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. DNA forensics at forty: the way forward.International journal of legal medicine · 2025
    Review
  6. Hair Metabolomic Profiling of Diseased Forest Musk Deer (Animals : an open access journal from MDPI · 2025
    Article
  7. A multi-level overview of the hair decomposition process.International journal of legal medicine · 2025
    Review
  8. Review
  9. Proteomics of the Dark-Ventral-Patch Sexual Signal in Male Red Deer.Animals : an open access journal from MDPI · 2025
    Article
  10. RedefiningFrontiers in microbiology · 2025
    Review
  11. Proteomic Analysis of Single Hairs.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. DNA and protein analyses of hair in forensic genetics.International journal of legal medicine · 2023
    Review
  17. Article
  18. Identifying individuals using proteomics: are we there yet?Frontiers in molecular biosciences · 2022
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 2 countries.

Glendon J ParkerDepartment of Biology, Utah Valley University, Orem, Utah, United States of America.ORCID http://orcid.org/0000-0003-2937-5853
Tami LeppertProtein-Based Identification Technologies L.L.C., Orem, Utah, United States of America.
Deon S AnexForensic Science Center, Lawrence Livermore National Laboratory, Livermore, California, United States of America.
Jonathan K HilmerDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, Montana, United States of America.
Nori MatsunamiDepartment of Human Genetics, University of Utah, Salt Lake City, Utah, United States of America.
Lisa BairdDepartment of Human Genetics, University of Utah, Salt Lake City, Utah, United States of America.
Jeffery StevensDepartment of Human Genetics, University of Utah, Salt Lake City, Utah, United States of America.
Krishna ParsawarMass Spectrometry and Proteomics Core Facility, University of Utah, Salt Lake City, Utah, United States of America.
Blythe P Durbin-JohnsonDepartment of Public Health Sciences, University of California, Davis, California, United States of America.
David M RockeDepartment of Public Health Sciences, University of California, Davis, California, United States of America.
Chad NelsonMass Spectrometry and Proteomics Core Facility, University of Utah, Salt Lake City, Utah, United States of America.
Daniel J FairbanksDepartment of Biology, Utah Valley University, Orem, Utah, United States of America.
Andrew S WilsonSchool of Archaeological Sciences, University of Bradford, Bradford, United Kingdom.
Robert H RiceDepartment of Environmental Toxicology, University of California, Davis, California, United States of America.
Scott R WoodwardSorenson Molecular Genealogical Foundation, Salt Lake City, Utah, United States of America.
Brian BothnerDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, Montana, United States of America.
Bradley R HartForensic Science Center, Lawrence Livermore National Laboratory, Livermore, California, United States of America.
Mark LeppertDepartment of Human Genetics, University of Utah, Salt Lake City, Utah, United States of America.
University of Utah · USUniversity of California, Davis · USLawrence Livermore National Laboratory · USMontana State University · USUtah Valley University · USFamilySearch · USUniversity of Bradford · GB

Funding

Workshop on Environmental Technology Transfer and EntrepreneurshipP42ES004699 · NIEHS · UNIVERSITY OF CALIFORNIA DAVIS · PI CHIAMVIMONVAT, NIPAVAN · 1987 to 2021
$50.1M
University of Utah Center for Clinical and Translational ScienceUL1TR001067 · NCATS · UNIVERSITY OF UTAH · PI DERE, WILLARD H., HESS, RACHEL · 2013 to 2017
$19.8M
VIRUSES: FROM PARTICLES TO PROTEOMICSP20RR020185 · NCRR · MONTANA STATE UNIVERSITY - BOZEMAN · PI MEISSNER, NICOLE · 2004 to 2011
$17.0M
Northwest Genomics CenterUC2HL102926 · NHLBI · UNIVERSITY OF WASHINGTON · PI GREEN, PHILIP P, NICKERSON, DEBORAH A · 2010 to 2010
$14.0M
UC Davis Clinical and Translational Science CenterUL1TR000002 · NCATS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BERGLUND, LARS F · 2012 to 2015
$12.2M
Northwest Genomics CenterRC2HL102926 · NHLBI · UNIVERSITY OF WASHINGTON · PI GREEN, PHILIP P, NICKERSON, DEBORAH A · 2009 to 2009
$11.0M
SYSTEMS BIOLOGY OF HOST-PATHOGEN INTERACTIONSP20RR024237 · NCRR · MONTANA STATE UNIVERSITY - BOZEMAN · PI GAUSS, KATHERINE A. · 2008 to 2011
$8.1M
ARRA - NHLBI Lung Cohorts Sequencing ProjectRC2HL102923 · NHLBI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, BARNES, KATHLEEN C · 2009 to 2009
$2.6M
ARRA - NHLBI Lung Cohorts Sequencing ProjectUC2HL102923 · NHLBI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, BARNES, KATHLEEN C · 2010 to 2010
$2.6M
WHI Sequencing Project (WHISP)UC2HL102924 · NHLBI · OHIO STATE UNIVERSITY · PI CARLSON, CHRISTOPHER S, JACKSON, REBECCA D · 2010 to 2010
$2.4M
WHI Sequencing Project (WHISP)RC2HL102924 · NHLBI · OHIO STATE UNIVERSITY · PI CARLSON, CHRISTOPHER S, JACKSON, REBECCA D · 2009 to 2009
$2.1M
Human Exome Sequencing in Six Well-Phenotyped NHLBI CohortsUC2HL103010 · NHLBI · UNIVERSITY OF VIRGINIA · PI RICH, STEPHEN S. · 2010 to 2010
$1.5M
NCATS NIH HHS UL1 TR000002NCATS NIH HHS UL1 TR001067NCRR NIH HHS P20 RR020185NCRR NIH HHS P20 RR024237NHLBI NIH HHS RC2 HL102923NHLBI NIH HHS RC2 HL102924NHLBI NIH HHS RC2 HL102926NHLBI NIH HHS RC2 HL103010NHLBI NIH HHS UC2 HL102923NHLBI NIH HHS UC2 HL102924NHLBI NIH HHS UC2 HL102926NHLBI NIH HHS UC2 HL103010NIEHS NIH HHS P42 ES004699
6 · The paper itself

Abstract

Human identification from biological material is largely dependent on the ability to characterize genetic polymorphisms in DNA. Unfortunately, DNA can degrade in the environment, sometimes below the level at which it can be amplified by PCR. Protein however is chemically more robust than DNA and can persist for longer periods. Protein also contains genetic variation in the form of single amino acid polymorphisms. These can be used to infer the status of non-synonymous single nucleotide polymorphism alleles. To demonstrate this, we used mass spectrometry-based shotgun proteomics to characterize hair shaft proteins in 66 European-American subjects. A total of 596 single nucleotide polymorphism alleles were correctly imputed in 32 loci from 22 genes of subjects' DNA and directly validated using Sanger sequencing. Estimates of the probability of resulting individual non-synonymous single nucleotide polymorphism allelic profiles in the European population, using the product rule, resulted in a maximum power of discrimination of 1 in 12,500. Imputed non-synonymous single nucleotide polymorphism profiles from European-American subjects were considerably less frequent in the African population (maximum likelihood ratio = 11,000). The converse was true for hair shafts collected from an additional 10 subjects with African ancestry, where some profiles were more frequent in the African population. Genetically variant peptides were also identified in hair shaft datasets from six archaeological skeletal remains (up to 260 years old). This study demonstrates that quantifiable measures of identity discrimination and biogeographic background can be obtained from detecting genetically variant peptides in hair shaft protein, including hair from bioarchaeological contexts.

Indexed as

Polymerase Chain ReactionProteomicsAllelesBlack PeopleForensic AnthropologyGenotypeHairHumansPolymorphism, Single NucleotideWhite People

Identifiers

PMID27603779
PMCPMC5014411
OpenAlexW2509075779

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.