Evidence map›Paper›PMID 27603136›Full record

ArticlePloS one2016

Ureaplasma diversum Genome Provides New Insights about the Interaction of the Surface Molecules of This Bacterium with the Host.

Lucas M Marques, Izadora S Rezende, Maysa S Barbosa, Ana M S Guimarães, Hellen B Martins, Guilherme B Campos, Naíla C do Nascimento, Andrea P Dos Santos, Aline T Amorim, Verena M Santos and 9 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 30 citations in OpenAlex.

  1. A genome-wide investigation ofFrontiers in microbiology · 2025
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  6. A Review ofFrontiers in veterinary science · 2021
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  13. Frontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 2 countries.

Lucas M MarquesDepartment of Microbiology, Institute of Biomedical Science, University of São Paulo, São Paulo, Brazil.
Izadora S RezendeDepartment of Microbiology, Institute of Biomedical Science, University of São Paulo, São Paulo, Brazil.
Maysa S BarbosaDepartment of Microbiology, Institute of Biomedical Science, University of São Paulo, São Paulo, Brazil.
Ana M S GuimarãesDepartment of Animal Health and Preventive Veterinary Medicine, College of Veterinary Medicine and Animal Science, University of São Paulo, São Paulo, Brazil.
Hellen B MartinsMultidisciplinary Institute of Health, Universidade Federal da Bahia, Vitória da Conquista, Brazil.
Guilherme B CamposDepartment of Microbiology, Institute of Biomedical Science, University of São Paulo, São Paulo, Brazil.
Naíla C do NascimentoDepartment of Comparative Pathobiology, Purdue University, West Lafayette, Indiana, United States of America.
Andrea P Dos SantosDepartment of Comparative Pathobiology, Purdue University, West Lafayette, Indiana, United States of America.
Aline T AmorimDepartment of Microbiology, Institute of Biomedical Science, University of São Paulo, São Paulo, Brazil.
Verena M SantosDepartment of Microbiology, Institute of Biomedical Science, University of São Paulo, São Paulo, Brazil.
Sávio T FariasEvolutionary Genetics Laboratory, Department of Molecular Biology, Federal University of Paraíba, João Pessoa, Paraíba, Brazil.
Fernanda  C BarrenceLaboratory of Biology of Mineralized Tissues, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil.
Lauro M de SouzaInstituto de Pesquisa Pelé Pequeno Príncipe-Faculdades Pequeno Príncipe, Curitiba, Brazil.
Melissa BuzinhaniDepartment of Microbiology, Institute of Biomedical Science, University of São Paulo, São Paulo, Brazil.
Victor E Arana-ChavezLaboratory of Biology of Mineralized Tissues, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil.
Maria E ZentenoLaboratory of Cellular and Molecular Biology, Institute of Biomedical Science, University of São Paulo, São Paulo, Brazil.
Gustavo P Amarante-MendesLaboratory of Cellular and Molecular Biology, Institute of Biomedical Science, University of São Paulo, São Paulo, Brazil.
Joanne B MessickDepartment of Comparative Pathobiology, Purdue University, West Lafayette, Indiana, United States of America.
Jorge TimenetskyDepartment of Microbiology, Institute of Biomedical Science, University of São Paulo, São Paulo, Brazil.
Universidade de São Paulo · BRUniversidade Federal da Bahia · BRPurdue University West Lafayette · USUniversidade Federal da Paraíba · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Whole genome sequencing and analyses of Ureaplasma diversum ATCC 49782 was undertaken as a step towards understanding U. diversum biology and pathogenicity. The complete genome showed 973,501 bp in a single circular chromosome, with 28.2% of G+C content. A total of 782 coding DNA sequences (CDSs), and 6 rRNA and 32 tRNA genes were predicted and annotated. The metabolic pathways are identical to other human ureaplasmas, including the production of ATP via hydrolysis of the urea. Genes related to pathogenicity, such as urease, phospholipase, hemolysin, and a Mycoplasma Ig binding protein (MIB)-Mycoplasma Ig protease (MIP) system were identified. More interestingly, a large number of genes (n = 40) encoding surface molecules were annotated in the genome (lipoproteins, multiple-banded antigen like protein, membrane nuclease lipoprotein and variable surface antigens lipoprotein). In addition, a gene encoding glycosyltransferase was also found. This enzyme has been associated with the production of capsule in mycoplasmas and ureaplasma. We then sought to detect the presence of a capsule in this organism. A polysaccharide capsule from 11 to 17 nm of U. diversum was observed trough electron microscopy and using specific dyes. This structure contained arabinose, xylose, mannose, galactose and glucose. In order to understand the inflammatory response against these surface molecules, we evaluated the response of murine macrophages J774 against viable and non-viable U. diversum. As with viable bacteria, non-viable bacteria were capable of promoting a significant inflammatory response by activation of Toll like receptor 2 (TLR2), indicating that surface molecules are important for the activation of inflammatory response. Furthermore, a cascade of genes related to the inflammasome pathway of macrophages was also up-regulated during infection with viable organisms when compared to non-infected cells. In conclusion, U. diversum has a typical ureaplasma genome and metabolism, and its surface molecules, including the identified capsular material, represent major components of the organism immunopathogenesis.

Indexed as

Base CompositionGenome, BacterialHigh-Throughput Nucleotide SequencingHost-Pathogen InteractionsHumansInflammasomesLipoproteinsMetabolic Networks and PathwaysMolecular Sequence AnnotationMycoplasmaPhospholipasesToll-Like ReceptorsUreaplasmaUreaplasma InfectionsUreaseInflammasomesLipoproteinsPhospholipasesToll-Like ReceptorsUrease

Identifiers

PMID27603136
PMCPMC5015763
OpenAlexW2516541128

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.