Evidence map›Paper›PMID 27603016›Full record

ArticlePLoS pathogens2016

Screen of Non-annotated Small Secreted Proteins of Pseudomonas syringae Reveals a Virulence Factor That Inhibits Tomato Immune Proteases.

Takayuki Shindo, Farnusch Kaschani, Fan Yang, Judit Kovács, Fang Tian, Jiorgos Kourelis, Tram Ngoc Hong, Tom Colby, Mohammed Shabab, Rohini Chawla and 5 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
10.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 60 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. The root pathogenFrontiers in plant science · 2023
    Article
  13. Article
  14. Plant immunity: Rice XA21-mediated resistance to bacterial infection.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. TheJournal of fungi (Basel, Switzerland) · 2021
    Article
  16. Article
  17. Article
  18. Extracellular proteolytic cascade in tomato activates immune protease Rcr3.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  19. The PTI to ETI Continuum inFrontiers in plant science · 2020
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 4 countries.

Takayuki ShindoPlant Chemetics lab, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Farnusch KaschaniPlant Chemetics lab, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Fan YangCenter for Plant Science Innovation and the Department of Plant Pathology, University of Nebraska-Lincoln, Lincoln, Nebraska, United States of America.ORCID 0000-0001-7104-4973
Judit KovácsDepartment of Plant Biology, University of Szeged, Szeged, Hungary.
Fang TianCenter for Plant Science Innovation and the Department of Plant Pathology, University of Nebraska-Lincoln, Lincoln, Nebraska, United States of America.
Jiorgos KourelisPlant Chemetics lab, Department of Plant Sciences, University of Oxford, Oxford, United Kingdom.
Tram Ngoc HongPlant Chemetics lab, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Tom ColbyMass Spectrometry Group, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Mohammed ShababPlant Chemetics lab, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Rohini ChawlaPlant Chemetics lab, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Selva KumariPlant Chemetics lab, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Muhammad IlyasPlant Chemetics lab, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Anja C HörgerPlant Chemetics lab, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
James R AlfanoCenter for Plant Science Innovation and the Department of Plant Pathology, University of Nebraska-Lincoln, Lincoln, Nebraska, United States of America.
Renier A L van der HoornPlant Chemetics lab, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Max Planck Institute for Plant Breeding Research · DEUniversity of Nebraska–Lincoln · USUniversity of Oxford · GBUniversity of Szeged · HU

Funding

Suppression of innate immunity by an ADP-ribosyltransferase type III effectorR01AI069146 · NIAID · UNIVERSITY OF NEBRASKA LINCOLN · PI ALFANO, JAMES ROBERT · 2008 to 2012
$1.8M
NIAID NIH HHS R01 AI069146
6 · The paper itself

Abstract

Pseudomonas syringae pv. tomato DC3000 (PtoDC3000) is an extracellular model plant pathogen, yet its potential to produce secreted effectors that manipulate the apoplast has been under investigated. Here we identified 131 candidate small, secreted, non-annotated proteins from the PtoDC3000 genome, most of which are common to Pseudomonas species and potentially expressed during apoplastic colonization. We produced 43 of these proteins through a custom-made gateway-compatible expression system for extracellular bacterial proteins, and screened them for their ability to inhibit the secreted immune protease C14 of tomato using competitive activity-based protein profiling. This screen revealed C14-inhibiting protein-1 (Cip1), which contains motifs of the chagasin-like protease inhibitors. Cip1 mutants are less virulent on tomato, demonstrating the importance of this effector in apoplastic immunity. Cip1 also inhibits immune protease Pip1, which is known to suppress PtoDC3000 infection, but has a lower affinity for its close homolog Rcr3, explaining why this protein is not recognized in tomato plants carrying the Cf-2 resistance gene, which uses Rcr3 as a co-receptor to detect pathogen-derived protease inhibitors. Thus, this approach uncovered a protease inhibitor of P. syringae, indicating that also P. syringae secretes effectors that selectively target apoplastic host proteases of tomato, similar to tomato pathogenic fungi, oomycetes and nematodes.

Indexed as

Bacterial ProteinsPeptide HydrolasesPlant DiseasesPlant LeavesPlant ProteinsProtease InhibitorsPseudomonas syringaeSolanum lycopersicumVirulenceVirulence FactorsBacterial ProteinsPeptide HydrolasesPlant ProteinsProtease InhibitorsVirulence Factors

Identifiers

PMID27603016
PMCPMC5014320
OpenAlexW2516716988

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.