Evidence map›Paper›PMID 27602560›Full record

ArticleJAMA psychiatry2016

Analysis of Intellectual Disability Copy Number Variants for Association With Schizophrenia.

Elliott Rees, Kimberley Kendall, Antonio F Pardiñas, Sophie E Legge, Andrew Pocklington, Valentina Escott-Price, James H MacCabe, David A Collier, Peter Holmans, Michael C O'Donovan and 3 more

Open access · greenAbstract read
In one paragraph

Article in JAMA psychiatry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed, 2 pooled it
14.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 2 syntheses or guidelines pooled it, 164 citations in OpenAlex.

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  20. The pleiotropic spectrum of proximal 16p11.2 CNVs.American journal of human genetics · 2024
    Review

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Elliott ReesMedical Research Council Centre for Neuropsychiatric Genetics and Genomics, Cardiff University, Cardiff, Wales.
Kimberley KendallMedical Research Council Centre for Neuropsychiatric Genetics and Genomics, Cardiff University, Cardiff, Wales.
Antonio F PardiñasMedical Research Council Centre for Neuropsychiatric Genetics and Genomics, Cardiff University, Cardiff, Wales.
Sophie E LeggeMedical Research Council Centre for Neuropsychiatric Genetics and Genomics, Cardiff University, Cardiff, Wales.
Andrew PocklingtonMedical Research Council Centre for Neuropsychiatric Genetics and Genomics, Cardiff University, Cardiff, Wales.
Valentina Escott-PriceMedical Research Council Centre for Neuropsychiatric Genetics and Genomics, Cardiff University, Cardiff, Wales.
James H MacCabeDepartment of Psychosis Studies, Institute of Psychiatry Psychology and Neuroscience, King's College London, London, England.
David A CollierSGDP Centre, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, England; Discovery Neuroscience Research, Eli Lilly and Company Ltd, Lilly Research Laboratories, Surrey, England.
Peter HolmansMedical Research Council Centre for Neuropsychiatric Genetics and Genomics, Cardiff University, Cardiff, Wales.
Michael C O'DonovanMedical Research Council Centre for Neuropsychiatric Genetics and Genomics, Cardiff University, Cardiff, Wales.
Michael J OwenMedical Research Council Centre for Neuropsychiatric Genetics and Genomics, Cardiff University, Cardiff, Wales; Division of Psychological Medicine and Clinical Neurosciences, Cardiff University, Cardiff, Wales.
James T R Walters *Medical Research Council Centre for Neuropsychiatric Genetics and Genomics, Cardiff University, Cardiff, Wales.
George Kirov *Medical Research Council Centre for Neuropsychiatric Genetics and Genomics, Cardiff University, Cardiff, Wales.
Medical Research Council · GBCardiff University · GBKing's College London · GB

Funding

Genetic Epidemiology of COPDU01HL089897 · NHLBI · NATIONAL JEWISH HEALTH · PI CRAPO, JAMES D · 2007 to 2021
$56.9M
Targeting the p53 pathway for reversal of oral premalignancyP50CA097007 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI MYERS, JEFFREY NICHOLAS · 2002 to 2012
$26.1M
UT M.D. Anderson Cancer Center SPORE in MelanomaP50CA093459 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI GRIMM, ELIZABETH A · 2004 to 2014
$23.7M
Genetic Epidemiology of COPDU01HL089856 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI SILVERMAN, EDWIN K · 2007 to 2021
$20.7M
The Collaborative Genetic Study of Nicotine DependenceP01CA089392 · NCI · WASHINGTON UNIVERSITY · PI BIERUT, LAURA J. · 2001 to 2012
$17.3M
RELAPSE: LINKING SCIENCE AND PRACTICEP50CA084724 · NCI · UNIVERSITY OF WISCONSIN MADISON · PI FIORE, MICHAEL C · 1999 to 2003
$8.9M
Tobacco Dependence: Treatment and OutcomesP50DA019706 · NIDA · UNIVERSITY OF WISCONSIN-MADISON · PI JACKSON, THOMAS C · 2004 to 2008
$8.6M
MOLECULAR GENETICS OF SCHIZOPHRENIAR01MH059571 · NIMH · UNIVERSITY OF CHICAGO · PI GEJMAN, PABLO V. · 1999 to 2007
$8.0M
Tissue CoreP01CA107584 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHEPHERD, JOHN ALAN · 2006 to 2010
$6.9M
Genome Wide Association Coordinating CenterU01HG004446 · NHGRI · UNIVERSITY OF WASHINGTON · PI WEIR, BRUCE S. · 2007 to 2011
$6.6M
Molecular Epidemiology of Head and Neck CancerR01ES011740 · NIEHS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI WEI, QINGYI · 2001 to 2012
$6.3M
Genetics of Fuchs Corneal DystrophyR01EY016835 · NEI · JOHNS HOPKINS UNIVERSITY · PI GOTTSCH, JOHN D · 2007 to 2017
$5.7M
Medical Research Council G0800509Medical Research Council G0801418Medical Research Council MR/L011794/1Medical Research Council MR/L023784/2Medical Research Council MR/P005748/1NCI NIH HHS P01 CA089392NCI NIH HHS P01 CA107584NCI NIH HHS P50 CA084724NCI NIH HHS P50 CA093459NCI NIH HHS P50 CA097007NCI NIH HHS R01 CA088363NCI NIH HHS R01 CA120120NCI NIH HHS R01 CA133996NEI NIH HHS R01 EY016482NEI NIH HHS R01 EY016514NEI NIH HHS R01 EY016835NEI NIH HHS R01 EY020483NHGRI NIH HHS HHSN268200782096CNHGRI NIH HHS U01 HG004446NHLBI NIH HHS HHSN268201100011CNHLBI NIH HHS HHSN268201100011INHLBI NIH HHS U01 HL089856NHLBI NIH HHS U01 HL089897NIDA NIH HHS P50 DA019706NIEHS NIH HHS R01 ES011740NIMH NIH HHS R01 MH059565NIMH NIH HHS R01 MH059566NIMH NIH HHS R01 MH059571NIMH NIH HHS R01 MH059586NIMH NIH HHS R01 MH059587NIMH NIH HHS R01 MH059588NIMH NIH HHS R01 MH060870NIMH NIH HHS R01 MH060879NIMH NIH HHS R01 MH061675NIMH NIH HHS R01 MH067257NIMH NIH HHS R01 MH081800NIMH NIH HHS U01 MH046276NIMH NIH HHS U01 MH046289NIMH NIH HHS U01 MH046318NIMH NIH HHS U01 MH079469NIMH NIH HHS U01 MH079470Wellcome Trust
6 · The paper itself

Abstract

importanceAt least 11 rare copy number variants (CNVs) have been shown to be major risk factors for schizophrenia (SZ). These CNVs also increase the risk for other neurodevelopmental disorders, such as intellectual disability. It is possible that additional intellectual disability-associated CNVs increase the risk for SZ but have not yet been implicated in SZ because of previous studies being underpowered.

objectiveTo examine whether additional CNVs implicated in intellectual disability represent novel SZ risk loci. DESIGN, SETTING, AND

participantsWe used single-nucleotide polymorphism (SNP) array data to evaluate a set of 51 CNVs implicated in intellectual disability (excluding the known SZ loci) in a large data set of patients with SZ and healthy persons serving as controls recruited in a variety of settings. We analyzed a new sample of 6934 individuals with SZ and 8751 controls and combined those data with previously published large data sets for a total of 20 403 cases of SZ and 26 628 controls. MAIN OUTCOMES AND MEASURES: Burden analysis of CNVs implicated in intellectual disability (excluding known SZ CNVs) for association with SZ. Association of individual intellectual disability CNV loci with SZ.

resultsOf data on the 20 403 cases (6151 [30.15%] female) and 26 628 controls (14 252 [53.52%] female), 51 intellectual disability CNVs were analyzed. Collectively, intellectual disability CNVs were significantly enriched for SZ (P = 1.0 × 10-6; odds ratio [OR], 1.9 [95% CI, 1.46-2.49]). Of the 51 CNVs tested, 19 (37%) were more common in SZ cases; only 4 (8%) were more common in controls (no observations were made for the remaining 28 [55%] loci). One novel locus, deletion at 16p12.1, was significantly associated with SZ after correction for multiple testing (rate in SZ, 33 [0.16%]; rate in controls, 12 [0.05%]; corrected P = .017; OR, 3.3; 95% CI, 1.61-7.05), and 2 loci reached nominal levels of significance (deletions at 2q11.2: 6 [0.03%] vs 1 [0.004%]; OR, 9.3; 95% CI, 1.03-447.76; corrected P > .99; and duplications at 10q11.21q11.23: 5 [0.2%] vs 0 [0.03%]; OR, infinity; 95% CI, 1.26-infinity; corrected P = .71). Our new data set also provided independent support for the 11 SZ risk loci previously reported to be associated with the disorder and for the protective effect of 22q11.2 duplication. CONCLUSIONS AND RELEVANCE: A large proportion of CNV loci implicated in intellectual disability are risk factors for SZ, but the available sample size precludes statistical confirmation for additional individual loci.

Indexed as

AdultCase-Control StudiesClozapineCohort StudiesComorbidityDNA Copy Number VariationsDrug ResistanceFemaleGenetic LociGenetic Predisposition to DiseaseGenotypeHumansIntellectual DisabilityMalePolymorphism, Single NucleotideReference ValuesClozapine

Identifiers

PMID27602560
PMCPMC5014093
OpenAlexW2510482597

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.