Evidence map›Paper›PMID 27602295›Full record

ArticlePeerJ2016

The health care and life sciences community profile for dataset descriptions.

Michel Dumontier, Alasdair J G Gray, M Scott Marshall, Vladimir Alexiev, Peter Ansell, Gary Bader, Joachim Baran, Jerven T Bolleman, Alison Callahan, José Cruz-Toledo and 20 more

Abstract read
In one paragraph

Article in PeerJ, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors.

Michel Dumontier *Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, United States of America.
Alasdair J G Gray *Department of Computer Science, Heriot-Watt University, Edinburgh, United Kingdom.
M Scott Marshall *Department of Radiation Oncology (MAASTRO), GROW- School for Oncology and Developmental Biology, MAASTRO Clinic, Maastricht, Netherlands.
Vladimir AlexievOntotext Corporation, Sofia, Bulgaria.
Peter AnsellCSIRO, Australia.
Gary BaderThe Donnelly Centre, University of Toronto, Toronto, Canada.
Joachim BaranStanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, United States of America.
Jerven T BollemanSwiss-Prot group, SIB Swiss Institute of Bioinformatics, Geneve, Switzerland.
Alison CallahanStanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, United States of America.
José Cruz-ToledoCarleton University, Canada.
Pascale GaudetCALIPHO group, SIB Swiss Institute of Bioinformatics, Geneve, Switzerland.
Erich A GomboczIO Informatics, Berkeley, CA, United States of America.
Alejandra N Gonzalez-BeltranOxford e-Research Centre, University of Oxford, Oxford, Oxfordshire, United Kingdom.
Paul GrothElsevier Labs, Netherlands.
Melissa HaendelDepartment of Medical Informatics and Epidemiology, Oregon Health Sciences University, Portland, OR, United States of America.
Maori ItoOffice of Medical Informatics and Epidemiology, Pharmaceuticals and Medical Devices Agency, Chiyoda-ku, Japan.
Simon JuppEMBL, European Bioinformatics Institute, Saffron Walden, United Kingdom.
Nick JutyEMBL, European Bioinformatics Institute, Saffron Walden, United Kingdom.
Toshiaki KatayamaDatabase Center for Life Science, Kashiwa, Japan.
Norio KobayashiAdvanced Center for Computing and Communication, RIKEN, Wako-shi, Saitama, Japan.
Kalpana KrishnaswamiCerenode Inc., United States of America.
Camille LaibeEMBL, European Bioinformatics Institute, Saffron Walden, United Kingdom.
Nicolas Le NovèreThe Babraham Institute, Cambridge, United Kingdom.
Simon LinNationwide Children's Hospital, Columbus, OH, United States of America.
James MaloneEMBL, European Bioinformatics Institute, Saffron Walden, United Kingdom.
Michael MillerInstitute for Systems Biology, Seattle, WA, United States of America.
Christopher J MungallEnvironmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, United States of America.
Laurens RietveldDepartment of Exact Sciences, VU University Amsterdam, Amsterdam, Netherlands.
Sarala M WimalaratneEMBL, European Bioinformatics Institute, Saffron Walden, United Kingdom.
Atsuko YamaguchiDatabase Center for Life Science, Kashiwa, Japan.

Funding

The Monarch Initiative: Linking Diseases to Model Organism ResourcesR24OD011883 · OD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HAENDEL, MELISSA A, MUNGALL, CHRISTOPHER J · 2012 to 2024
$16.0M
Pathway Commons: Research Resource for Biological PathwaysU41HG006623 · NHGRI · SLOAN-KETTERING INST CAN RESEARCH · PI SANDER, CHRIS · 2012 to 2017
$5.7M
NHGRI NIH HHS U41 HG006623NIH HHS R24 OD011883
6 · The paper itself

Abstract

Access to consistent, high-quality metadata is critical to finding, understanding, and reusing scientific data. However, while there are many relevant vocabularies for the annotation of a dataset, none sufficiently captures all the necessary metadata. This prevents uniform indexing and querying of dataset repositories. Towards providing a practical guide for producing a high quality description of biomedical datasets, the W3C Semantic Web for Health Care and the Life Sciences Interest Group (HCLSIG) identified Resource Description Framework (RDF) vocabularies that could be used to specify common metadata elements and their value sets. The resulting guideline covers elements of description, identification, attribution, versioning, provenance, and content summarization. This guideline reuses existing vocabularies, and is intended to meet key functional requirements including indexing, discovery, exchange, query, and retrieval of datasets, thereby enabling the publication of FAIR data. The resulting metadata profile is generic and could be used by other domains with an interest in providing machine readable descriptions of versioned datasets.

Indexed as

Data profilingDataset descriptionsFAIR dataMetadataProvenance

Identifiers

PMID27602295
PMCPMC4991880

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.