Evidence map›Paper›PMID 27602054›Full record

ArticleBiotechnology for biofuels2016

Structural and functional characterization of a highly stable endo-β-1,4-xylanase from Fusarium oxysporum and its development as an efficient immobilized biocatalyst.

Sara Gómez, Asia M Payne, Martin Savko, Gavin C Fox, William E Shepard, Francisco J Fernandez, M Cristina Vega

Abstract read
In one paragraph

Article in Biotechnology for biofuels, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Recent progress in the microbial production of Xylanase.World journal of microbiology & biotechnology · 2025
    Review
  3. Review
  4. X-Ray Crystallography for Macromolecular Complexes.Advances in experimental medicine and biology · 2024
    Article
  5. Bright Side ofJournal of fungi (Basel, Switzerland) · 2021
    Review
  6. Article
  7. Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sara GómezStructural and Quantitative Biology Department, Center for Biological Research (CIB-CSIC), Ramiro de Maeztu 9, 28040 Madrid, Spain.
Asia M PayneStructural and Quantitative Biology Department, Center for Biological Research (CIB-CSIC), Ramiro de Maeztu 9, 28040 Madrid, Spain.
Martin SavkoSynchrotron SOLEIL, L'Orme des Merisieris Saint-Aubin BP48, 91192 Gif-sur-Yvette, France.
Gavin C FoxSynchrotron SOLEIL, L'Orme des Merisieris Saint-Aubin BP48, 91192 Gif-sur-Yvette, France.
William E ShepardSynchrotron SOLEIL, L'Orme des Merisieris Saint-Aubin BP48, 91192 Gif-sur-Yvette, France.
Francisco J FernandezStructural and Quantitative Biology Department, Center for Biological Research (CIB-CSIC), Ramiro de Maeztu 9, 28040 Madrid, Spain ; Department of Immunology, Complutense University School of Medicine, Madrid, Spain ; Abvance Biotech srl, Madrid, Spain.
M Cristina VegaStructural and Quantitative Biology Department, Center for Biological Research (CIB-CSIC), Ramiro de Maeztu 9, 28040 Madrid, Spain.ORCID 0000-0003-0628-8378

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundReplacing fossil fuel with renewable sources such as lignocellulosic biomass is currently a promising alternative for obtaining biofuel and for fighting against the consequences of climate change. However, the recalcitrant structure of lignocellulosic biomass residues constitutes a major limitation for its widespread use in industry. The efficient hydrolysis of lignocellulosic materials requires the complementary action of multiple enzymes including xylanases and β-xylosidases, which are responsible for cleaving exo- and endoxylan linkages, that release oligocarbohydrates that can be further processed by other enzymes.

resultsWe have identified the endo-β-1,4-xylanase Xyl2 from Fusarium oxysporum as a promising glycoside hydrolase family 11 enzyme for the industrial degradation of xylan. To characterize Xyl2, we have cloned the synthetic optimized gene and expressed and purified recombinant Xyl2 to homogeneity, finally obtaining 10 mg pure Xyl2 per liter of culture. The crystal structure of Xyl2 at 1.56 Å resolution and the structure of a methyl-xylopyranoside Xyl2 complex at 2.84 Å resolution cast a highly detailed view of the active site of the enzyme, revealing the molecular basis for the high catalytic efficiency of Xyl2. The kinetic analysis of Xyl2 demonstrates high xylanase activity and non-negligible β-xylosidase activity under a variety of experimental conditions including alkaline pH and elevated temperature. Immobilizing Xyl2 on a variety of solid supports enhances the enzymatic properties that render Xyl2 a promising industrial biocatalyst, which, together with the detailed structural data, may establish Xyl2 as a platform for future developments of industrially relevant xylanases.

conclusionsF. oxysporum Xyl2 is a GH11 xylanase which is highly active in free form and immobilized onto a variety of solid supports in a wide pH range. Furthermore, immobilization of Xyl2 on certain supports significantly increases its thermal stability. A mechanistic rationale for Xyl2's remarkable catalytic efficiency at alkaline pH is proposed on the basis of two crystallographic structures. Together, these properties render Xyl2 an attractive biocatalyst for the sustainable industrial degradation of xylan.

Indexed as

BioethanolDockingFamily 11 glycoside hydrolase (GH11)ImmobilizationLignocellulosic biomassStructural biologyX-ray crystallographyXylanase

Identifiers

PMID27602054
PMCPMC5011838

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.