Evidence map›Paper›PMID 27601654›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Mutations in mitochondrial enzyme GPT2 cause metabolic dysfunction and neurological disease with developmental and progressive features.

Qing Ouyang, Tojo Nakayama, Ozan Baytas, Shawn M Davidson, Chendong Yang, Michael Schmidt, Sofia B Lizarraga, Sasmita Mishra, Malak Ei-Quessny, Saima Niaz and 19 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 66 citations in OpenAlex.

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  15. Metabolites as signalling molecules.Nature reviews. Molecular cell biology · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 13 institutions in 5 countries.

Qing OuyangDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI 02912; Institute for Brain Science, Brown University, Providence, RI 02912; Developmental Disorders Genetics Research Program, Emma Pendleton Bradley Hospital and Department of Psychiatry and Human Behavior, Alpert Medical School of Brown University, East Providence, RI 02915;
Tojo NakayamaDivision of Genetics and Genomics, Department of Medicine, Boston Children's Hospital, Boston, MA 02115; Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA 02115; Department of Pediatrics, Harvard Medical School, Boston, MA 02115;
Ozan BaytasDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI 02912; Institute for Brain Science, Brown University, Providence, RI 02912;
Shawn M DavidsonDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139;
Chendong YangDepartment of Pediatrics, Children's Medical Center Research Institute, University of Texas Southwestern Medical Center, Dallas, TX 75390;
Michael SchmidtDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI 02912; Institute for Brain Science, Brown University, Providence, RI 02912; Developmental Disorders Genetics Research Program, Emma Pendleton Bradley Hospital and Department of Psychiatry and Human Behavior, Alpert Medical School of Brown University, East Providence, RI 02915;
Sofia B LizarragaCenter for Childhood of Neurotherapeutics, Department of Biological Sciences, University of South Carolina, Columbia, SC 29208;
Sasmita MishraDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI 02912; Institute for Brain Science, Brown University, Providence, RI 02912;
Malak Ei-QuessnyDivision of Genetics and Genomics, Department of Medicine, Boston Children's Hospital, Boston, MA 02115; Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA 02115;
Saima NiazPakistan Psychiatric Research Centre, Fountain House, Lahore, Pakistan; North London Forensic Service, Chase Farm Hospital, Barnet, Enfield and Haringey Mental Health National Health Service Trust, Enfield EN2 8JL, United Kingdom;
Mirrat Gul ButtPakistan Psychiatric Research Centre, Fountain House, Lahore, Pakistan; Department of Psychiatry, Fatima Jinnah Medical College/Sir Ganga Ram Hospital, Lahore, Pakistan;
Syed Imran MurtazaPakistan Psychiatric Research Centre, Fountain House, Lahore, Pakistan;
Afzal JavedPakistan Psychiatric Research Centre, Fountain House, Lahore, Pakistan;
Haroon Rashid ChaudhryPakistan Psychiatric Research Centre, Fountain House, Lahore, Pakistan; Department of Psychiatry, Fatima Jinnah Medical College/Sir Ganga Ram Hospital, Lahore, Pakistan;
Dylan J VaughanDivision of Genetics and Genomics, Department of Medicine, Boston Children's Hospital, Boston, MA 02115; Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA 02115;
R Sean HillDivision of Genetics and Genomics, Department of Medicine, Boston Children's Hospital, Boston, MA 02115; Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA 02115;
Jennifer N PartlowDivision of Genetics and Genomics, Department of Medicine, Boston Children's Hospital, Boston, MA 02115; Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA 02115; Howard Hughes Medical Institute, Boston Children's Hospital, Boston, MA 02115;
Seung-Yun YooDivision of Genetics and Genomics, Department of Medicine, Boston Children's Hospital, Boston, MA 02115; Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA 02115; Howard Hughes Medical Institute, Boston Children's Hospital, Boston, MA 02115;
Anh-Thu N LamDivision of Genetics and Genomics, Department of Medicine, Boston Children's Hospital, Boston, MA 02115; Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA 02115; Howard Hughes Medical Institute, Boston Children's Hospital, Boston, MA 02115;
Ramzi NasirDepartment of Pediatrics, Harvard Medical School, Boston, MA 02115; Division of Developmental Medicine, Department of Medicine, Boston Children's Hospital, Boston, MA 02115;
Muna Al-SaffarDivision of Genetics and Genomics, Department of Medicine, Boston Children's Hospital, Boston, MA 02115; Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA 02115; Department of Paediatrics, College of Medicine and Health Sciences, United Arab Emirates University, Al-Ain, United Arab Emirates;
A James BarkovichDepartment of Radiology and Biomedical Imaging, University of California, San Francisco, CA 94143;
Matthew SchwedeDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI 02912; Institute for Brain Science, Brown University, Providence, RI 02912;
Shailender NagpalDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI 02912; Institute for Brain Science, Brown University, Providence, RI 02912; Developmental Disorders Genetics Research Program, Emma Pendleton Bradley Hospital and Department of Psychiatry and Human Behavior, Alpert Medical School of Brown University, East Providence, RI 02915;
Anna RajabNational Genetic Centre, Directorate General of Royal Hospital, Ministry of Health, Muscat, Sultanate of Oman;
Ralph J DeBerardinisDepartment of Pediatrics, Children's Medical Center Research Institute, University of Texas Southwestern Medical Center, Dallas, TX 75390;
David E HousmanDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139; dhousman@mit.edu Ganesh.Mochida@childrens.harvard.edu Eric_Morrow@brown.edu.
Ganeshwaran H MochidaDivision of Genetics and Genomics, Department of Medicine, Boston Children's Hospital, Boston, MA 02115; Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA 02115; Department of Pediatrics, Harvard Medical School, Boston, MA 02115; Pediatric Neurology Unit, Department of Neurology, Massachusetts General Hospital, Boston, MA 02114 dhousman@mit.edu Ganesh.Mochida@childrens.harvard.edu Eric_Morrow@brown.edu.
Eric M MorrowDepartment of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI 02912; Institute for Brain Science, Brown University, Providence, RI 02912; Developmental Disorders Genetics Research Program, Emma Pendleton Bradley Hospital and Department of Psychiatry and Human Behavior, Alpert Medical School of Brown University, East Providence, RI 02915; dhousman@mit.edu Ganesh.Mochida@childrens.harvard.edu Eric_Morrow@brown.edu.
Brown University · USBoston Children's Hospital · USDana-Farber/Boston Children's Cancer and Blood Disorders Center · USMassachusetts Institute of Technology · USThe University of Texas Southwestern Medical Center · USBarnet Enfield and Haringey Mental Health Trust · GBFatima Jinnah Medical University · PKHoward Hughes Medical Institute · USMassachusetts General Hospital · USRoyal Hospital · OMSir Ganga Ram Hospital · PKUniversity of California, San Francisco · USUniversity of South Carolina · US

Funding

PRE-DOCTORAL TRAINING IN THE BIOLOGICAL SCIENCEST32GM007287 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BELL, STEPHEN P., KEATING, AMY E · 1985 to 2019
$40.8M
HUMAN EPILEPSY GENETICS--NEURONAL MIGRATION DISORDERSR01NS035129 · NINDS · BOSTON CHILDREN'S HOSPITAL · PI WALSH, CHRISTOPHER A. · 1997 to 2023
$9.5M
METABOLIC REGULATORS OF TUMOR CELL GROWTHR01CA157996 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI DEBERARDINIS, RALPH J · 2011 to 2017
$2.2M
Genetic Analysis of Microcephaly in Tunisian PopulationR21TW008223 · FIC · BOSTON CHILDREN'S HOSPITAL · PI WALSH, CHRISTOPHER A. · 2008 to 2009
$190k
FIC NIH HHS R21 TW008223NCI NIH HHS R01 CA157996NIGMS NIH HHS T32 GM007287NINDS NIH HHS R01 NS035129
6 · The paper itself

Abstract

Mutations that cause neurological phenotypes are highly informative with regard to mechanisms governing human brain function and disease. We report autosomal recessive mutations in the enzyme glutamate pyruvate transaminase 2 (GPT2) in large kindreds initially ascertained for intellectual and developmental disability (IDD). GPT2 [also known as alanine transaminase 2 (ALT2)] is one of two related transaminases that catalyze the reversible addition of an amino group from glutamate to pyruvate, yielding alanine and α-ketoglutarate. In addition to IDD, all affected individuals show postnatal microcephaly and ∼80% of those followed over time show progressive motor symptoms, a spastic paraplegia. Homozygous nonsense p.Arg404* and missense p.Pro272Leu mutations are shown biochemically to be loss of function. The GPT2 gene demonstrates increasing expression in brain in the early postnatal period, and GPT2 protein localizes to mitochondria. Akin to the human phenotype, Gpt2-null mice exhibit reduced brain growth. Through metabolomics and direct isotope tracing experiments, we find a number of metabolic abnormalities associated with loss of Gpt2. These include defects in amino acid metabolism such as low alanine levels and elevated essential amino acids. Also, we find defects in anaplerosis, the metabolic process involved in replenishing TCA cycle intermediates. Finally, mutant brains demonstrate misregulated metabolites in pathways implicated in neuroprotective mechanisms previously associated with neurodegenerative disorders. Overall, our data reveal an important role for the GPT2 enzyme in mitochondrial metabolism with relevance to developmental as well as potentially to neurodegenerative mechanisms.

Indexed as

Amino Acid SequenceAnimalsBrainCitric Acid CycleHomozygoteHumansKetoglutaric AcidsMiceMitochondriaMutation, MissenseNervous System DiseasesPhenotypePyruvic AcidTransaminasesGPT2 protein, humanKetoglutaric AcidsPyruvic AcidTransaminasesGPT2intellectual and developmental disabilitymetabolomicsmitochondriaspastic paraplegia

Identifiers

PMID27601654
PMCPMC5035873
OpenAlexW2517626590

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.