Evidence map›Paper›PMID 27601466›Full record

ArticleThe Journal of biological chemistry2016

Identification of the Plant Ribokinase and Discovery of a Role for Arabidopsis Ribokinase in Nucleoside Metabolism.

John W Riggs, Nathan C Rockwell, Philip C Cavales, Judy Callis

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Lithium in plants.The New phytologist · 2025
    Review
  3. Article
  4. Sugar-sensing swodkoreceptors and swodkocrine signaling.Animal models and experimental medicine · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. 2-NBDG Uptake inFrontiers in plant science · 2023
    Article
  11. Article
  12. Nucleotide Metabolism in Plants.Plant physiology · 2020
    Article
  13. Article
  14. Article
  15. Ribokinase from Leishmania donovani: purification, characterization and X-ray crystallographic analysis.Acta crystallographica. Section F, Structural biology communications · 2018
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

John W RiggsFrom the Department of Molecular and Cellular Biology, University of California, Davis, California 95616.
Nathan C RockwellFrom the Department of Molecular and Cellular Biology, University of California, Davis, California 95616.
Philip C CavalesFrom the Department of Molecular and Cellular Biology, University of California, Davis, California 95616.
Judy CallisFrom the Department of Molecular and Cellular Biology, University of California, Davis, California 95616 jcallis@ucdavis.edu.ORCID http://orcid.org/0000-0002-0622-078X
University of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ribose can be used for energy or as a component of several important biomolecules, but for it to be used in either capacity it must first be phosphorylated by ribokinase (RBSK). RBSK proteins are part of the phosphofructokinase-B (pfkB) family of carbohydrate kinases. Sequence comparisons of pfkB proteins from the model plant Arabidopsis thaliana with the human and Escherichia coli RBSK identified a single candidate RBSK, At1g17160 (AtRBSK). AtRBSK is more similar to predicted RBSKs from other plant species and known mammalian and prokaryotic RBSK than to all other PfkB proteins in Arabidopsis AtRBSK contains a predicted chloroplast transit peptide, and we confirmed plastid localization using AtRBSK fused to YFP. Structure prediction software verified that the AtRBSK sequence mapped onto a known RBSK structure. Kinetic parameters of purified recombinant AtRBSK were determined to be K

Indexed as

ArabidopsisArabidopsis ProteinsEscherichia coliHumansNucleosidesPhosphotransferases (Alcohol Group Acceptor)RiboseArabidopsis ProteinsNucleosidesPhosphotransferases (Alcohol Group Acceptor)ribokinaseRibosecarbohydrate kinasecarbohydrate metabolismcarbohydrate processingenzymenucleoside/nucleotide metabolismphosphorylationplant biochemistry

Identifiers

PMID27601466
PMCPMC5077194
OpenAlexW2520491064

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.