Evidence map›Paper›PMID 27601211›Full record

ArticleEuropean journal of human genetics : EJHG2016

Hereditary spastic paraplegias: identification of a novel SPG57 variant affecting TFG oligomerization and description of HSP subtypes in Sudan.

Liena E O Elsayed, Inaam N Mohammed, Ahlam A A Hamed, Maha A Elseed, Adam Johnson, Mathilde Mairey, Hassab Elrasoul S A Mohamed, Mohamed N Idris, Mustafa A M Salih, Sarah M El-Sadig and 24 more

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 35 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Cell type-specific gene therapy confers protection against motor neuron disease caused by a TFG variant.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. TFG regulates secretory and endosomal sorting pathways in neurons to promote their activity and maintenance.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Review
  10. Article
  11. Review
  12. Pathogenic Variants inFrontiers in neurology · 2021
    Article
  13. Review
  14. Review
  15. Review
  16. Novel Homozygous Missense Mutation in theFrontiers in neurology · 2020
    Article
  17. Update on the Genetics of Spastic Paraplegias.Current neurology and neuroscience reports · 2019
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors at 9 institutions in 4 countries.

Liena E O ElsayedInstitut du Cerveau et de la Moelle épinière, INSERM U1127, CNRS UMR7225, Sorbonne Universités, UPMC Université Paris VI UMR_S1127, Paris, France.
Inaam N MohammedUniversity of Khartoum, Khartoum, Sudan.
Ahlam A A HamedUniversity of Khartoum, Khartoum, Sudan.
Maha A ElseedUniversity of Khartoum, Khartoum, Sudan.
Adam JohnsonDepartment of Biomolecular Chemistry, University of Wisconsin-Madison School of Medicine and Public Health, Madison, WI, USA.
Mathilde MaireyInstitut du Cerveau et de la Moelle épinière, INSERM U1127, CNRS UMR7225, Sorbonne Universités, UPMC Université Paris VI UMR_S1127, Paris, France.
Hassab Elrasoul S A MohamedAlnelain Medical Center, Khartoum, Sudan.
Mohamed N IdrisUniversity of Khartoum, Khartoum, Sudan.
Mustafa A M SalihDivision of Pediatric Neurology, Department of Pediatrics, College of Medicine, King Saud University, Riyadh, Saudi Arabia.
Sarah M El-SadigUniversity of Khartoum, Khartoum, Sudan.
Mahmoud E KokoDepartment of Molecular Biology, Institute of Endemic Diseases, University of Khartoum, Khartoum, Sudan.ORCID http://orcid.org/0000-0001-9512-0184
Ashraf Y O MohamedDepartment of Biochemistry, Faculty of Medicine, National University, Khartoum, Sudan.
Laure RaymondInstitut du Cerveau et de la Moelle épinière, INSERM U1127, CNRS UMR7225, Sorbonne Universités, UPMC Université Paris VI UMR_S1127, Paris, France.
Marie CoutelierInstitut du Cerveau et de la Moelle épinière, INSERM U1127, CNRS UMR7225, Sorbonne Universités, UPMC Université Paris VI UMR_S1127, Paris, France.
Frédéric DariosInstitut du Cerveau et de la Moelle épinière, INSERM U1127, CNRS UMR7225, Sorbonne Universités, UPMC Université Paris VI UMR_S1127, Paris, France.
Rayan A SiddigNeelain University, Khartoum, Sudan.
Ahmed K M A AhmedUniversity of Khartoum, Khartoum, Sudan.
Arwa M A BabaiUniversity of Khartoum, Khartoum, Sudan.
Hiba M O MalikUniversity of Khartoum, Khartoum, Sudan.
Zulfa M B M OmerUniversity of Khartoum, Khartoum, Sudan.
Eman O E MohamedUniversity of Khartoum, Khartoum, Sudan.
Hanan B EltahirDepartment of Biochemistry, El Imam EL Mahdi University, Kosti, Sudan.
Nasr Aldin A MagboulDepartment of Radiology, Alamal National Hospital, Khartoum, Sudan.
Elfatih E BusharaUniversity of Khartoum, Khartoum, Sudan.
Abdelrahman ElnourDepartment of Radiology, Ribat University Hospital, Khartoum, Sudan.
Salah M Abdel RahimDepartment of Radiology, Alamal National Hospital, Khartoum, Sudan.
Abdelmoneim AlattayaAntalya Medical Center, Khartoum, Sudan.
Mustafa I ElbashirUniversity of Khartoum, Khartoum, Sudan.
Muntaser E IbrahimDepartment of Molecular Biology, Institute of Endemic Diseases, University of Khartoum, Khartoum, Sudan.
Alexandra DurrInstitut du Cerveau et de la Moelle épinière, INSERM U1127, CNRS UMR7225, Sorbonne Universités, UPMC Université Paris VI UMR_S1127, Paris, France.
Anjon AudhyaDepartment of Biomolecular Chemistry, University of Wisconsin-Madison School of Medicine and Public Health, Madison, WI, USA.
Alexis BriceInstitut du Cerveau et de la Moelle épinière, INSERM U1127, CNRS UMR7225, Sorbonne Universités, UPMC Université Paris VI UMR_S1127, Paris, France. alexis.brice@upmc.fr.
Ammar E AhmedUniversity of Khartoum, Khartoum, Sudan.
Giovanni StevaninInstitut du Cerveau et de la Moelle épinière, INSERM U1127, CNRS UMR7225, Sorbonne Universités, UPMC Université Paris VI UMR_S1127, Paris, France. giovanni.stevanin@upmc.fr.
University of Khartoum · SDCentre National de la Recherche Scientifique · FRSudan Medical Specialization Board · SDUniversity of Wisconsin–Madison · USAl-Neelain University · SDKing Saud University · SANational Ribat University · SDNational University · SDUniversity of El Imam El Mahdi · SD

Funding

Regulatory mechanisms that control vesicle secretion at the endoplasmic reticulumR01GM110567 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI AUDHYA, ANJON · 2015 to 2019
$1.8M
NIGMS NIH HHS R01 GM110567
6 · The paper itself

Abstract

Hereditary spastic paraplegias (HSP) are the second most common type of motor neuron disease recognized worldwide. We investigated a total of 25 consanguineous families from Sudan. We used next-generation sequencing to screen 74 HSP-related genes in 23 families. Linkage analysis and candidate gene sequencing was performed in two other families. We established a genetic diagnosis in six families with autosomal recessive HSP (SPG11 in three families and TFG/SPG57, SACS and ALS2 in one family each). A heterozygous mutation in a gene involved in an autosomal dominant HSP (ATL1/SPG3A) was also identified in one additional family. Six out of seven identified variants were novel. The c.64C>T (p.(Arg22Trp)) TFG/SPG57 variant (PB1 domain) is the second identified that underlies HSP, and we demonstrated its impact on TFG oligomerization in vitro. Patients did not present with visual impairment as observed in a previously reported SPG57 family (c.316C>T (p.(Arg106Cys)) in coiled-coil domain), suggesting unique contributions of the PB1 and coiled-coil domains in TFG complex formation/function and a possible phenotype correlation to variant location. Some families manifested marked phenotypic variations implying the possibility of modifier factors complicated by high inbreeding. Finally, additional genetic heterogeneity is expected in HSP Sudanese families. The remaining families might unravel new genes or uncommon modes of inheritance.

Indexed as

AdolescentAdultChildFemaleGenetic Association StudiesGenetic LinkageGenetic Predisposition to DiseaseGuanine Nucleotide Exchange FactorsHeat-Shock ProteinsHeterozygoteHumansMagnetic Resonance ImagingMaleMiddle AgedMutationPedigreeALS2 protein, humanGuanine Nucleotide Exchange FactorsHeat-Shock ProteinsProteinsSACS protein, humanTFG protein, humanVesicular Transport Proteins

Identifiers

PMID27601211
PMCPMC5159756
OpenAlexW2517074305

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.