Evidence map›Paper›PMID 27600813›Full record

ArticlePlant physiology2016

Primary Metabolism during Biosynthesis of Secondary Wall Polymers of Protoxylem Vessel Elements.

Misato Ohtani, Keiko Morisaki, Yuji Sawada, Ryosuke Sano, Abigail Loren Tung Uy, Atsushi Yamamoto, Tetsuya Kurata, Yoshimi Nakano, Shiro Suzuki, Mami Matsuda and 3 more

Abstract read
In one paragraph

Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Misato OhtaniGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (M.O., K.M., R.S., A.L.T.U., A.Y., T.K., Y.N., T.D.).ORCID 0000-0001-5429-3310
Keiko MorisakiGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (M.O., K.M., R.S., A.L.T.U., A.Y., T.K., Y.N., T.D.).
Yuji SawadaGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (M.O., K.M., R.S., A.L.T.U., A.Y., T.K., Y.N., T.D.).
Ryosuke SanoGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (M.O., K.M., R.S., A.L.T.U., A.Y., T.K., Y.N., T.D.).
Abigail Loren Tung UyGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (M.O., K.M., R.S., A.L.T.U., A.Y., T.K., Y.N., T.D.).ORCID 0000-0002-7069-2845
Atsushi YamamotoGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (M.O., K.M., R.S., A.L.T.U., A.Y., T.K., Y.N., T.D.).
Tetsuya KurataGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (M.O., K.M., R.S., A.L.T.U., A.Y., T.K., Y.N., T.D.).
Yoshimi NakanoGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (M.O., K.M., R.S., A.L.T.U., A.Y., T.K., Y.N., T.D.).ORCID 0000-0002-4515-1633
Shiro SuzukiGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (M.O., K.M., R.S., A.L.T.U., A.Y., T.K., Y.N., T.D.).
Mami MatsudaGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (M.O., K.M., R.S., A.L.T.U., A.Y., T.K., Y.N., T.D.).
Tomohisa HasunumaGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (M.O., K.M., R.S., A.L.T.U., A.Y., T.K., Y.N., T.D.).
Masami Yokota HiraiGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (M.O., K.M., R.S., A.L.T.U., A.Y., T.K., Y.N., T.D.).
Taku DemuraGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (M.O., K.M., R.S., A.L.T.U., A.Y., T.K., Y.N., T.D.); demura@bs.naist.jp.ORCID 0000-0002-2499-4738

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Xylem vessels, the water-conducting cells in vascular plants, undergo characteristic secondary wall deposition and programmed cell death. These processes are regulated by the VASCULAR-RELATED NAC-DOMAIN (VND) transcription factors. Here, to identify changes in metabolism that occur during protoxylem vessel element differentiation, we subjected tobacco (Nicotiana tabacum) BY-2 suspension culture cells carrying an inducible VND7 system to liquid chromatography-mass spectrometry-based wide-target metabolome analysis and transcriptome analysis. Time-course data for 128 metabolites showed dynamic changes in metabolites related to amino acid biosynthesis. The concentration of glyceraldehyde 3-phosphate, an important intermediate of the glycolysis pathway, immediately decreased in the initial stages of cell differentiation. As cell differentiation progressed, specific amino acids accumulated, including the shikimate-related amino acids and the translocatable nitrogen-rich amino acid arginine. Transcriptome data indicated that cell differentiation involved the active up-regulation of genes encoding the enzymes catalyzing fructose 6-phosphate biosynthesis from glyceraldehyde 3-phosphate, phosphoenolpyruvate biosynthesis from oxaloacetate, and phenylalanine biosynthesis, which includes shikimate pathway enzymes. Concomitantly, active changes in the amount of fructose 6-phosphate and phosphoenolpyruvate were detected during cell differentiation. Taken together, our results show that protoxylem vessel element differentiation is associated with changes in primary metabolism, which could facilitate the production of polysaccharides and lignin monomers and, thus, promote the formation of the secondary cell wall. Also, these metabolic shifts correlate with the active transcriptional regulation of specific enzyme genes. Therefore, our observations indicate that primary metabolism is actively regulated during protoxylem vessel element differentiation to alter the cell's metabolic activity for the biosynthesis of secondary wall polymers.

Indexed as

Biosynthetic PathwaysAmino AcidsCell DifferentiationCell WallGene Expression ProfilingGene Expression Regulation, PlantGlycolysisLigninMetabolomeMetabolomicsNicotianaPolymersPrincipal Component AnalysisShikimic AcidXylemAmino AcidsLigninPolymersShikimic Acid

Identifiers

PMID27600813
PMCPMC5100780

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.