Evidence map›Paper›PMID 27600407›Full record

ArticleJournal of biomedical informatics2016

GIST 2.0: A scalable multi-trait metric for quantifying population representativeness of individual clinical studies.

Anando Sen, Shreya Chakrabarti, Andrew Goldstein, Shuang Wang, Patrick B Ryan, Chunhua Weng

Abstract read
In one paragraph

Article in Journal of biomedical informatics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. A Standardized Guideline for Assessing Extracted Electronic Health Records Cohorts: A Scoping Review.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2025
    Article
  8. Article
  9. Review
  10. Article
  11. The Problem of Fairness in Synthetic Healthcare Data.Entropy (Basel, Switzerland) · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. A knowledge base of clinical trial eligibility criteria.Journal of biomedical informatics · 2021
    Article
  16. Article
  17. Assessing the Use and Perception of Dietary Supplements Among Obese Patients with National Health and Nutrition Examination Survey.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2020
    Article
  18. Assessing the Validity of aAMIA ... Annual Symposium proceedings. AMIA Symposium · 2019
    Article
  19. Article
  20. The representativeness of eligible patients in type 2 diabetes trials: a case study using GIST 2.0.Journal of the American Medical Informatics Association : JAMIA · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Anando SenDepartment of Biomedical Informatics, Columbia University, New York, NY 10032, United States. Electronic address: as5050@cumc.columbia.edu.
Shreya ChakrabartiDepartment of Biomedical Informatics, Columbia University, New York, NY 10032, United States. Electronic address: sc4025@cumc.columbia.edu.
Andrew GoldsteinDepartment of Biomedical Informatics, Columbia University, New York, NY 10032, United States; Department of Medicine, New York University, New York NY 10016, United States. Electronic address: ag3304@cumc.columbia.edu.
Shuang WangDepartment of Biostatistics, Columbia University, New York, NY 10032, United States. Electronic address: sw2206@cumc.columbia.edu.
Patrick B RyanDepartment of Biomedical Informatics, Columbia University, New York, NY 10032, United States; Janssen Research and Development, Titusville, NJ 08560, United States. Electronic address: ryan@ohdsi.org.
Chunhua WengDepartment of Biomedical Informatics, Columbia University, New York, NY 10032, United States. Electronic address: cw2384@cumc.columbia.edu.

Funding

Clinical and Translational Science AwardUL1TR001873 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI REILLY, MUREDACH P · 2016 to 2025
$99.0M
Training in Biomedical Informatics at Columbia UniversityT15LM007079 · NLM · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI NOEMIE ELHADAD, GEORGE M HRIPCSAK · 1992 to 2026
$28.9M
Clinical and Translational Science AwardUL1TR000040 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GINSBERG, HENRY N · 2012 to 2015
$26.2M
OMOP information model for eMERGE phenotypingU01HG008680 · NHGRI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Wendy K Chung, GEORGE M HRIPCSAK · 2015 to 2026
$13.3M
Bridging the Semantic Gap Between Research Eligibility Criteria and Clinical DataR01LM009886 · NLM · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI WENG, CHUNHUA · 2009 to 2020
$5.3M
NCATS NIH HHS UL1 TR000040NCATS NIH HHS UL1 TR001873NHGRI NIH HHS U01 HG008680NLM NIH HHS R01 LM009886NLM NIH HHS T15 LM007079
6 · The paper itself

Abstract

The design of randomized controlled clinical studies can greatly benefit from iterative assessments of population representativeness of eligibility criteria. We propose a multi-trait metric - GIST 2.0 that can compute the a priori generalizability based on the population representativeness of a clinical study by explicitly modeling the dependencies among all eligibility criteria. We evaluate this metric on twenty clinical studies of two diseases and analyze how a study's eligibility criteria affect its generalizability (collectively and individually). We statistically analyze the effects of trial setting, trait selection and trait summarizing technique on GIST 2.0. Finally we provide theoretical as well as empirical validations for the expected properties of GIST 2.0.

Indexed as

Patient SelectionRandomized Controlled Trials as TopicBiomedical ResearchHumansSoftwareClinical trialsEligibility criteriaGeneralizabilityPopulation representativenessTrait dependencies

Identifiers

PMID27600407
PMCPMC5077682

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.