Evidence map›Paper›PMID 27600087›Full record

ArticleMicroarrays (Basel, Switzerland)2016

Serology in the Digital Age: Using Long Synthetic Peptides Created from Nucleic Acid Sequences as Antigens in Microarrays.

Muhammad Rizwan, Bengt Rönnberg, Maksims Cistjakovs, Åke Lundkvist, Rudiger Pipkorn, Jonas Blomberg

Open access · goldAbstract read
In one paragraph

Article in Microarrays (Basel, Switzerland), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Muhammad RizwanSection of Clinical Virology, Department of Medical Sciences, Uppsala University, Uppsala 751 85, Sweden. rizwan.muhd715@gmail.com.
Bengt RönnbergSection of Clinical Virology, Department of Medical Sciences, Uppsala University, Uppsala 751 85, Sweden. bengt.ronnberg@gmail.com.
Maksims CistjakovsSection of Clinical Virology, Department of Medical Sciences, Uppsala University, Uppsala 751 85, Sweden. Maksims.Cistjakovs@rsu.lv.
Åke LundkvistLaboratory of Clinical Microbiology, Uppsala University Hospital, Uppsala 751 85, Sweden. ake.lundkvist@imbim.uu.se.
Rudiger PipkornDeutsches Krebsforschungszentrum, Heidelberg 69121, Germany. pipkorn@t-online.de.
Jonas BlombergSection of Clinical Virology, Department of Medical Sciences, Uppsala University, Uppsala 751 85, Sweden. Jonas.blomberg@medsci.uu.se.
Uppsala University · SEGerman Cancer Research Center · DELinköping University Hospital · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAntibodies to microbes, or to autoantigens, are important markers of disease. Antibody detection (serology) can reveal both past and recent infections. There is a great need for development of rational ways of detecting and quantifying antibodies, both for humans and animals. Traditionally, serology using synthetic antigens covers linear epitopes using up to 30 amino acid peptides.

methodsWe here report that peptides of 100 amino acids or longer ("megapeptides"), designed and synthesized for optimal serological performance, can successfully be used as detection antigens in a suspension multiplex immunoassay (SMIA). Megapeptides can quickly be created just from pathogen sequences. A combination of rational sequencing and bioinformatic routines for definition of diagnostically-relevant antigens can, thus, rapidly yield efficient serological diagnostic tools for an emerging infectious pathogen.

resultsWe designed megapeptides using bioinformatics and viral genome sequences. These long peptides were tested as antigens for the presence of antibodies in human serum to the filo-, herpes-, and polyoma virus families in a multiplex microarray system. All of these virus families contain recently discovered or emerging infectious viruses.

conclusionLong synthetic peptides can be useful as serological diagnostic antigens, serving as biomarkers, in suspension microarrays.

Indexed as

emerging virus infectionsimmunoassaymegapeptidesuspension microarraysuspension multiplex immunoassay (SMIA)

Identifiers

PMID27600087
PMCPMC5040969
OpenAlexW2479748074

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.