Evidence map›Paper›PMID 27599856›Full record

ArticleActa crystallographica. Section F, Structural biology communications2016

pHluorin-assisted expression, purification, crystallization and X-ray diffraction data analysis of the C-terminal domain of the HsdR subunit of the Escherichia coli type I restriction-modification system EcoR124I.

Pavel Grinkevich, Iuliia Iermak, Nicholas A Luedtke, Jeroen R Mesters, Rüdiger Ettrich, Jost Ludwig

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Article in Acta crystallographica. Section F, Structural biology communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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2citing papers in PubMed
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2 citing papers in PubMed.

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5 · Who and what money

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6 authors.

Pavel GrinkevichCenter for Nanobiology and Structural Biology, Institute of Microbiology ASCR, v.v.i., Zamek 136, 37333 Nove Hrady, Czech Republic.
Iuliia IermakCenter for Nanobiology and Structural Biology, Institute of Microbiology ASCR, v.v.i., Zamek 136, 37333 Nove Hrady, Czech Republic.
Nicholas A LuedtkeCenter for Nanobiology and Structural Biology, Institute of Microbiology ASCR, v.v.i., Zamek 136, 37333 Nove Hrady, Czech Republic.
Jeroen R MestersInstitute of Biochemistry, University of Lübeck, Ratzeburger Allee 160, Lübeck, Germany.
Rüdiger EttrichCenter for Nanobiology and Structural Biology, Institute of Microbiology ASCR, v.v.i., Zamek 136, 37333 Nove Hrady, Czech Republic.
Jost LudwigCenter for Nanobiology and Structural Biology, Institute of Microbiology ASCR, v.v.i., Zamek 136, 37333 Nove Hrady, Czech Republic.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The HsdR subunit of the type I restriction-modification system EcoR124I is responsible for the translocation as well as the restriction activity of the whole complex consisting of the HsdR, HsdM and HsdS subunits, and while crystal structures are available for the wild type and several mutants, the C-terminal domain comprising approximately 150 residues was not resolved in any of these structures. Here, three fusion constructs with the GFP variant pHluorin developed to overexpress, purify and crystallize the C-terminal domain of HsdR are reported. The shortest of the three encompassed HsdR residues 887-1038 and yielded crystals that belonged to the orthorhombic space group C2221, with unit-cell parameters a = 83.42, b = 176.58, c = 126.03 Å, α = β = γ = 90.00° and two molecules in the asymmetric unit (VM = 2.55 Å(3) Da(-1), solvent content 50.47%). X-ray diffraction data were collected to a resolution of 2.45 Å.

Indexed as

Amino Acid SequenceCloning, MolecularCrystallizationCrystallography, X-RayDeoxyribonucleases, Type I Site-SpecificEscherichia coliEscherichia coli ProteinsGene ExpressionGreen Fluorescent ProteinsPlasmidsProtein SubunitsRecombinant Fusion ProteinsX-Ray DiffractionDeoxyribonucleases, Type I Site-Specificendodeoxyribonuclease EcoR124IEscherichia coli ProteinsGreen Fluorescent ProteinsHsdR protein, E coliPHluorinProtein SubunitsRecombinant Fusion ProteinsEcoR124IEscherichia coliGFPHsdRpHluorinrestriction-modification system

Identifiers

PMID27599856
PMCPMC5012205

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