Evidence map›Paper›PMID 27599759›Full record

ArticleScientific reports2016

Snapshots of a shrinking partner: Genome reduction in Serratia symbiotica.

Alejandro Manzano-Marín, Amparo Latorre

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed.

  1. Article
  2. A genomic view of Earth's biomes.Nature reviews. Genetics · 2026
    Review
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  15. Article
  16. Human follicular mites: Ectoparasites becoming symbionts.Molecular biology and evolution · 2022
    Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Alejandro Manzano-MarínInstitut Cavanilles de Biodiversitat I Biologia Evolutiva - Universitat de València, Genética Evolutiva, Paterna, 46980, Spain.
Amparo LatorreInstitut Cavanilles de Biodiversitat I Biologia Evolutiva - Universitat de València, Genética Evolutiva, Paterna, 46980, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genome reduction is pervasive among maternally-inherited endosymbiotic organisms, from bacteriocyte- to gut-associated ones. This genome erosion is a step-wise process in which once free-living organisms evolve to become obligate associates, thereby losing non-essential or redundant genes/functions. Serratia symbiotica (Gammaproteobacteria), a secondary endosymbiont present in many aphids (Hemiptera: Aphididae), displays various characteristics that make it a good model organism for studying genome reduction. While some strains are of facultative nature, others have established co-obligate associations with their respective aphid host and its primary endosymbiont (Buchnera). Furthermore, the different strains hold genomes of contrasting sizes and features, and have strikingly disparate cell shapes, sizes, and tissue tropism. Finally, genomes from closely related free-living Serratia marcescens are also available. In this study, we describe in detail the genome reduction process (from free-living to reduced obligate endosymbiont) undergone by S. symbiotica, and relate it to the stages of integration to the symbiotic system the different strains find themselves in. We establish that the genome reduction patterns observed in S. symbiotica follow those from other dwindling genomes, thus proving to be a good model for the study of the genome reduction process within a single bacterial taxon evolving in a similar biological niche (aphid-Buchnera).

Indexed as

Genome, BacterialAmino AcidsBiosynthetic PathwaysCluster AnalysisGene Expression Regulation, BacterialGene RearrangementGenes, BacterialRNA, BacterialRNA StabilityRNA, TransferSerratiaAmino AcidsRNA, BacterialRNA, Transfer

Identifiers

PMID27599759
PMCPMC5013485

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.