Evidence map›Paper›PMID 27599735›Full record

ArticleActa crystallographica. Section D, Structural biology2016

Merging of synchrotron serial crystallographic data by a genetic algorithm.

Ulrich Zander, Michele Cianci, Nicolas Foos, Catarina S Silva, Luca Mazzei, Chloe Zubieta, Alejandro de Maria, Max H Nanao

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Fibril Structure of Desiccation-Protective Tardigrade Protein CAHS-8.Angewandte Chemie (International ed. in English) · 2026
    Article
  2. Article
  3. Article
  4. Single-support serial isomorphous replacement phasing.Acta crystallographica. Section D, Structural biology · 2022
    Article
  5. Article
  6. Article
  7. Best practices for time-resolved serial synchrotron crystallography.Acta crystallographica. Section D, Structural biology · 2022
    Review
  8. Article
  9. Article
  10. Multi-crystal data collection using synchrotron radiation as exemplified with low-symmetry crystals of Dps.Acta crystallographica. Section F, Structural biology communications · 2020
    Article
  11. Article
  12. Article
  13. Choosing your (Friedel) mates wisely: grouping data sets to improve anomalous signal.Acta crystallographica. Section D, Structural biology · 2019
    Article
  14. Article
  15. Long-wavelength Mesh&Collect native SAD phasing from microcrystals.Acta crystallographica. Section D, Structural biology · 2019
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. KAMO: towards automated data processing for microcrystals.Acta crystallographica. Section D, Structural biology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ulrich ZanderStructural Biology Group, European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000 Grenoble, France.
Michele CianciEuropean Molecular Biology Laboratory, Hamburg Outstation, Building 25a, c/o DESY, Notkestrasse 85, 22607 Hamburg, Germany.
Nicolas FoosStructural Biology Group, European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000 Grenoble, France.
Catarina S SilvaLaboratoire de Physiologie Cellulaire et Végétale, Universite Grenoble Alpes, CNRS, CEA, INRA, BIG, Grenoble, France.
Luca MazzeiLaboratory of Bioinorganic Chemistry, Department of Pharmacy and Biotechnology, University of Bologna, Bologna, Italy.
Chloe ZubietaLaboratoire de Physiologie Cellulaire et Végétale, Universite Grenoble Alpes, CNRS, CEA, INRA, BIG, Grenoble, France.
Alejandro de MariaStructural Biology Group, European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000 Grenoble, France.
Max H NanaoStructural Biology Group, European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000 Grenoble, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent advances in macromolecular crystallography have made it practical to rapidly collect hundreds of sub-data sets consisting of small oscillations of incomplete data. This approach, generally referred to as serial crystallography, has many uses, including an increased effective dose per data set, the collection of data from crystals without harvesting (in situ data collection) and studies of dynamic events such as catalytic reactions. However, selecting which data sets from this type of experiment should be merged can be challenging and new methods are required. Here, it is shown that a genetic algorithm can be used for this purpose, and five case studies are presented in which the merging statistics are significantly improved compared with conventional merging of all data.

Indexed as

AlgorithmsAldose-Ketose IsomerasesArabidopsisArabidopsis ProteinsBacillusBacterial ProteinsCluster AnalysisCrystallography, X-RayInsulinProteinsSporosarcinaSynchrotronsThermolysinTranscription FactorsUreaseAldose-Ketose IsomerasesArabidopsis ProteinsBacterial ProteinsInsulinLux Arrhythmo protein, ArabidopsisProteinsThermolysinTranscription FactorsUreasexylose isomerasecluster analysisgenetic algorithmsserial crystallography

Identifiers

PMID27599735
PMCPMC5013596

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.