Evidence map›Paper›PMID 27599734›Full record

ArticleActa crystallographica. Section D, Structural biology2016

Crystal structure of human interferon-γ receptor 2 reveals the structural basis for receptor specificity.

Pavel Mikulecký, Jirí Zahradník, Petr Kolenko, Jiří Černý, Tatsiana Charnavets, Lucie Kolářová, Iva Nečasová, Phuong Ngoc Pham, Bohdan Schneider

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. A Novel Splice Site Mutation inFrontiers in immunology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Pavel MikuleckýInstitute of Biotechnology CAS, BIOCEV, Prumyslova 595, 252 50 Vestec, Czech Republic.
Jirí ZahradníkInstitute of Biotechnology CAS, BIOCEV, Prumyslova 595, 252 50 Vestec, Czech Republic.
Petr KolenkoInstitute of Biotechnology CAS, BIOCEV, Prumyslova 595, 252 50 Vestec, Czech Republic.
Jiří ČernýInstitute of Biotechnology CAS, BIOCEV, Prumyslova 595, 252 50 Vestec, Czech Republic.
Tatsiana CharnavetsInstitute of Biotechnology CAS, BIOCEV, Prumyslova 595, 252 50 Vestec, Czech Republic.
Lucie KolářováInstitute of Biotechnology CAS, BIOCEV, Prumyslova 595, 252 50 Vestec, Czech Republic.
Iva NečasováInstitute of Biotechnology CAS, BIOCEV, Prumyslova 595, 252 50 Vestec, Czech Republic.
Phuong Ngoc PhamInstitute of Biotechnology CAS, BIOCEV, Prumyslova 595, 252 50 Vestec, Czech Republic.
Bohdan SchneiderInstitute of Biotechnology CAS, BIOCEV, Prumyslova 595, 252 50 Vestec, Czech Republic.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Interferon-γ receptor 2 is a cell-surface receptor that is required for interferon-γ signalling and therefore plays a critical immunoregulatory role in innate and adaptive immunity against viral and also bacterial and protozoal infections. A crystal structure of the extracellular part of human interferon-γ receptor 2 (IFNγR2) was solved by molecular replacement at 1.8 Å resolution. Similar to other class 2 receptors, IFNγR2 has two fibronectin type III domains. The characteristic structural features of IFNγR2 are concentrated in its N-terminal domain: an extensive π-cation motif of stacked residues KWRWRH, a NAG-W-NAG sandwich (where NAG stands for N-acetyl-D-glucosamine) and finally a helix formed by residues 78-85, which is unique among class 2 receptors. Mass spectrometry and mutational analyses showed the importance of N-linked glycosylation to the stability of the protein and confirmed the presence of two disulfide bonds. Structure-based bioinformatic analysis revealed independent evolutionary behaviour of both receptor domains and, together with multiple sequence alignment, identified putative binding sites for interferon-γ and receptor 1, the ligands of IFNγR2.

Indexed as

Amino Acid MotifsCrystallography, X-RayDisulfidesGlycosylationHumansModels, MolecularProtein ConformationProtein DomainsProtein FoldingProtein StabilityReceptors, InterferonDisulfidesIFNGR2 protein, humanReceptors, Interferonclass 2 cytokine receptorsfibronectin type III domaininterferon-γ receptor 2

Identifiers

PMID27599734
PMCPMC5013595

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.