Evidence map›Paper›PMID 27599042›Full record

ArticleBritish journal of cancer2016

Hypoxia-independent gene expression signature associated with radiosensitisation of prostate cancer cell lines by histone deacetylase inhibition.

Marte Jonsson, Harald Bull Ragnum, Cathinka Halle Julin, Andree Yeramian, Trevor Clancy, Kari-Anne Myrum Frikstad, Therese Seierstad, Trond Stokke, Xavier Matias-Guiu, Anne Hansen Ree and 2 more

Open access · hybridAbstract read
In one paragraph

Article in British journal of cancer, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 28 citations in OpenAlex.

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  6. Prognostic value ofFrontiers in genetics · 2022
    Article
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  8. Tumor mutation burden as a biomarker in resected gastric cancer via its association with immune infiltration and hypoxia.Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association · 2021
    Article
  9. Article
  10. Interfering with Tumor Hypoxia for Radiotherapy Optimization.Journal of experimental & clinical cancer research : CR · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Marte JonssonDepartment of Radiation Biology, Norwegian Radium Hospital, Oslo University Hospital, Pb 4950, Nydalen, 0424 Oslo, Norway.
Harald Bull RagnumDepartment of Radiation Biology, Norwegian Radium Hospital, Oslo University Hospital, Pb 4950, Nydalen, 0424 Oslo, Norway.
Cathinka Halle JulinDepartment of Radiation Biology, Norwegian Radium Hospital, Oslo University Hospital, Pb 4950, Nydalen, 0424 Oslo, Norway.
Andree YeramianDepartment of Pathology and Molecular Genetics HUAV, University of Lleida, Lleida, Spain.
Trevor ClancyDepartment of Tumor Biology, Norwegian Radium Hospital, Oslo University Hospital, Oslo, Norway.
Kari-Anne Myrum FrikstadDepartment of Radiation Biology, Norwegian Radium Hospital, Oslo University Hospital, Pb 4950, Nydalen, 0424 Oslo, Norway.
Therese SeierstadDepartment of Radiology and Nuclear Medicine, Norwegian Radium Hospital, Oslo University Hospital, Oslo, Norway.
Trond StokkeDepartment of Radiation Biology, Norwegian Radium Hospital, Oslo University Hospital, Pb 4950, Nydalen, 0424 Oslo, Norway.
Xavier Matias-GuiuDepartment of Pathology and Molecular Genetics HUAV, University of Lleida, Lleida, Spain.
Anne Hansen ReeInstitute of Clinical Medicine, Faculty of Medicine, University of Oslo, Oslo, Norway.
Kjersti FlatmarkInstitute of Clinical Medicine, Faculty of Medicine, University of Oslo, Oslo, Norway.
Heidi LyngDepartment of Radiation Biology, Norwegian Radium Hospital, Oslo University Hospital, Pb 4950, Nydalen, 0424 Oslo, Norway.
Oslo University Hospital · NOUniversitat de Lleida · ESUniversity of Oslo · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHistone deacetylase inhibitors (HDACis) like vorinostat are promising radiosensitisers in prostate cancer, but their effect under hypoxia is not known. We investigated gene expression associated with radiosensitisation of normoxic and hypoxic prostate cancer cells by vorinostat.

methodsCells were exposed to vorinostat under normoxia or hypoxia and subjected to gene expression profiling before irradiation and clonogenic survival analysis.

resultsPretreatment with vorinostat led to radiosensitisation of the intrinsically radioresistant DU 145 cells, but not the radiosensitive PC-3 and 22Rv1 cells, and was independent of hypoxia status. Knockdown experiments showed that the sensitisation was not caused by repression of hypoxia-inducible factor HIF1 or tumour protein TP53. Global deregulation of DNA repair and chromatin organisation genes was associated with radiosensitisation under both normoxia and hypoxia. A radiosensitisation signature with expression changes of 56 genes was generated and valid for both conditions. For eight signature genes, baseline expression also correlated with sensitisation, showing potential as pretreatment biomarker. The hypoxia independence of the signature was confirmed in a clinical data set.

conclusionsPretreatment with HDACi may overcome radioresistance of hypoxic prostate tumours by similar mechanisms as under normoxia. We propose a gene signature to predict radiosensitising effects independent of hypoxia status.

Indexed as

AdenocarcinomaAntineoplastic AgentsBiomarkers, TumorCell CycleCell HypoxiaCell Line, TumorChromatinDNA RepairGene Expression Regulation, NeoplasticGene Knockdown TechniquesGenes, p53Histone Deacetylase InhibitorsHumansHydroxamic AcidsHypoxia-Inducible Factor 1, alpha SubunitMaleAntineoplastic AgentsBiomarkers, TumorChromatinHIF1A protein, humanHistone Deacetylase InhibitorsHydroxamic AcidsHypoxia-Inducible Factor 1, alpha SubunitNeoplasm ProteinsRadiation-Sensitizing AgentsTP53 protein, humanTumor Suppressor Protein p53Vorinostat

Identifiers

PMID27599042
PMCPMC5061908
OpenAlexW2514972769

What OpenQuestion holds

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LicenceCC BY-NC-SA
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.