Evidence map›Paper›PMID 27597779›Full record

ArticleThe Biochemical journal2016

The HemQ coprohaem decarboxylase generates reactive oxygen species: implications for the evolution of classical haem biosynthesis.

Charlie Hobbs, Harry A Dailey, Mark Shepherd

Open access · hybridAbstract read
In one paragraph

Article in The Biochemical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Heme auxotrophy in abundant aquatic microbial lineages.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  4. Article
  5. Article
  6. The cyanobacterial protoporphyrinogen oxidase HemJ is a newThe Journal of biological chemistry · 2018
    Article
  7. Article
  8. Prokaryotic Heme Biosynthesis: Multiple Pathways to a Common Essential Product.Microbiology and molecular biology reviews : MMBR · 2017
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Charlie HobbsSchool of Biosciences, University of Kent, Canterbury, Kent CT2 7NJ, U.K.
Harry A DaileyBiomedical and Health Sciences Institute, University of Georgia, Athens, GA 30602, U.S.A. Department of Microbiology, University of Georgia, Athens, GA 30602, U.S.A. Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, U.S.A.
Mark ShepherdSchool of Biosciences, University of Kent, Canterbury, Kent CT2 7NJ, U.K.
University of Georgia · US

Funding

Erythroid heme synthesis regulation via the ferrochelatase [2Fe-2S] clusterR01DK096051 · NIDDK · UNIVERSITY OF GEORGIA · PI DAILEY, HARRY A · 2012 to 2015
$1.5M
Terminal steps in Heme BiosynthesisR56DK032303 · NIDDK · UNIVERSITY OF GEORGIA · PI DAILEY, HARRY A · 2010 to 2010
$175k
NIDDK NIH HHS R01 DK096051NIDDK NIH HHS R56 DK032303
6 · The paper itself

Abstract

Bacteria require a haem biosynthetic pathway for the assembly of a variety of protein complexes, including cytochromes, peroxidases, globins, and catalase. Haem is synthesised via a series of tetrapyrrole intermediates, including non-metallated porphyrins, such as protoporphyrin IX, which is well known to generate reactive oxygen species in the presence of light and oxygen. Staphylococcus aureus has an ancient haem biosynthetic pathway that proceeds via the formation of coproporphyrin III, a less reactive porphyrin. Here, we demonstrate, for the first time, that HemY of S. aureus is able to generate both protoporphyrin IX and coproporphyrin III, and that the terminal enzyme of this pathway, HemQ, can stimulate the generation of protoporphyrin IX (but not coproporphyrin III). Assays with hydrogen peroxide, horseradish peroxidase, superoxide dismutase, and catalase confirm that this stimulatory effect is mediated by superoxide. Structural modelling reveals that HemQ enzymes do not possess the structural attributes that are common to peroxidases that form compound I [Fe

Indexed as

Bacterial ProteinsCatalaseCoproporphyrinogen OxidaseCoproporphyrinsFree RadicalsHemeHorseradish PeroxidaseHydrogen PeroxideModels, ChemicalProtoporphyrinogen OxidaseProtoporphyrinsReactive Oxygen SpeciesStaphylococcus aureusSuperoxide DismutaseBacterial ProteinsCatalasecoproporphyrin IIICoproporphyrinogen OxidaseCoproporphyrinsFree RadicalsHemeHorseradish PeroxidaseHydrogen Peroxideprotoporphyrin IXProtoporphyrinogen OxidaseProtoporphyrinsReactive Oxygen SpeciesSuperoxide Dismutasecoproporphyrinogenprotoporphyrinogen

Identifiers

PMID27597779
PMCPMC5095920
OpenAlexW2509104738

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.