Evidence map›Paper›PMID 27597148›Full record

ArticleAmerican journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons2017

Changes in Urinary Microbiome Populations Correlate in Kidney Transplants With Interstitial Fibrosis and Tubular Atrophy Documented in Early Surveillance Biopsies.

B D Modena, R Milam, F Harrison, J A Cheeseman, M M Abecassis, J J Friedewald, A D Kirk, D R Salomon

Abstract read
In one paragraph

Article in American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 74 citations in OpenAlex.

  1. Trial
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. More than an infection: the ecological puzzle of recurrent urinary tract infections.Frontiers in cellular and infection microbiology · 2026
    Review
  8. Review
  9. Article
  10. Article
  11. The Microbiota-Human Health Axis.Microorganisms · 2025
    Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Comparison of the urinary microbiome in men who have sex with men with and without Chlamydia trachomatis infection.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2024
    Article
  17. Review
  18. Article
  19. The Urinary Microbiome in Health and Disease: Relevance for Bladder Cancer.International journal of molecular sciences · 2024
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

B D ModenaDepartment of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA.
R MilamDepartment of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA.
F HarrisonDepartment of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA.
J A CheesemanDepartment of Surgery, Duke University, Durham, NC.
M M AbecassisNorthwestern Comprehensive Transplant Center, Northwestern University, Chicago, IL.ORCID 0000-0001-9333-463X
J J FriedewaldNorthwestern Comprehensive Transplant Center, Northwestern University, Chicago, IL.ORCID 0000-0002-9344-9928
A D KirkDepartment of Surgery, Duke University, Durham, NC.
D R SalomonDepartment of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA.
Scripps Research Institute · USDuke University · USNorthwestern University · US

Funding

Quantitative Biology CoreU19AI063603 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI ABECASSIS, MICHAEL M · 2004 to 2015
$26.4M
Scripps Translational Science InstituteKL2TR001112 · NCATS · SCRIPPS RESEARCH INSTITUTE, THE · PI TOPOL, ERIC JEFFREY · 2013 to 2017
$3.0M
NCATS NIH HHS KL2 TR001112NCATS NIH HHS L30 TR001289NIAID NIH HHS U19 AI063603
6 · The paper itself

Abstract

An unbalanced microbiome may lead to disease by creating aberrant immune responses. A recent association of cellular rejection with the development of interstitial fibrosis and tubular atrophy (IFTA) suggests the role of immune-mediated tissue injury. We hypothesized that developing IFTA correlates with altered urinary tract microbiomes (UMBs). UMBs at two serial time points, 1 and 6-8 months posttransplant, were assessed by 16S microbial ribosomal gene sequencing in 25 patients developing biopsy-proven IFTA compared to 23 transplant patients with normal biopsies and excellent function (TX) and 20 healthy nontransplant controls (HC). Streptococcus, the dominant genera in HC males, was lower in IFTA and TX males at 1 month compared to HCs. At 6-8 months, Streptococcus was further decreased in IFTA males, but normalized in TX. IFTA males and females had increases in number of genera per sample at 6-8 months. UMB composition varied substantially between individuals in all groups. Despite the wide variation in UMBs between individuals, IFTA was associated with a loss in dominant resident urinary microbes in males, and a parallel increase in nonresident, pathogenic bacteria in males and females. UMB changes may contribute to IFTA development by alteration of the host immune response.

Indexed as

AtrophyBiomarkersBiopsyCase-Control StudiesFemaleFibrosisFollow-Up StudiesGlomerular Filtration RateGraft RejectionGraft SurvivalHumansKidney Failure, ChronicKidney Function TestsKidney TransplantationKidney TubulesLung Diseases, InterstitialBiomarkersRNA, Ribosomal, 16Sbasic (laboratory) research/scienceclinical research/practiceimmunobiologyimmunosuppression/immune modulationinterstitial fibrosis and tubular atrophykidney (allograft) function/dysfunctionkidney transplantation/nephrologymicrobiomicsrejection: chronictissue injury and repair

Identifiers

PMID27597148
PMCPMC5328852
OpenAlexW2514596056

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.