Evidence map›Paper›PMID 27594854›Full record

ArticleFrontiers in microbiology2016

Chronic Polyaromatic Hydrocarbon (PAH) Contamination Is a Marginal Driver for Community Diversity and Prokaryotic Predicted Functioning in Coastal Sediments.

Mathilde Jeanbille, Jérôme Gury, Robert Duran, Jacek Tronczynski, Jean-François Ghiglione, Hélène Agogué, Olfa Ben Saïd, Najwa Taïb, Didier Debroas, Cédric Garnier and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 45 citations in OpenAlex.

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  16. Diversity and Niche of Archaea in Bioremediation.Archaea (Vancouver, B.C.) · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 8 institutions in 2 countries.

Mathilde JeanbilleEquipe Environnement et Microbiologie, Institut Pluridisciplinaire de Recherche sur l'Environnement et les Matériaux, UMR 5254 CNRS - Université de Pau et des Pays de L'Adour Pau, France.
Jérôme GuryEquipe Environnement et Microbiologie, Institut Pluridisciplinaire de Recherche sur l'Environnement et les Matériaux, UMR 5254 CNRS - Université de Pau et des Pays de L'Adour Pau, France.
Robert DuranEquipe Environnement et Microbiologie, Institut Pluridisciplinaire de Recherche sur l'Environnement et les Matériaux, UMR 5254 CNRS - Université de Pau et des Pays de L'Adour Pau, France.
Jacek TronczynskiLaboratoire Biogéochimie des Contaminants Organiques, Unité Biogéochimie et Ecotoxicologie, Département Ressources Biologiques et Environnement, Ifremer Centre Atlantique Nantes, France.
Jean-François GhiglioneLaboratoire d'Océanographie Microbienne, Sorbonne Universités, CNRS, Université Pierre-et-Marie-Curie, UMR 7621, Observatoire Océanologique Banyuls-sur-mer, France.
Hélène AgoguéLittoral, Environnement et Sociétés, UMR 7266 CNRS - Université de La Rochelle La Rochelle, France.
Olfa Ben SaïdLaboratoire de Bio-surveillance de l'Environnement, Faculté des Sciences de Bizerte Zarzouna, Tunisia.
Najwa TaïbLaboratoire Microorganismes: Génome et Environnement, UMR 6023 CNRS - Université Blaise Pascal Aubière, France.
Didier DebroasLaboratoire Microorganismes: Génome et Environnement, UMR 6023 CNRS - Université Blaise Pascal Aubière, France.
Cédric GarnierProcessus de Transferts et d'Echanges dans l'Environnement, EA 3819, Université de Toulon La Garde, France.
Jean-Christophe AuguetMarine Biodiversity, Exploitation and Conservation, UMR CNRS 9190 Montpellier, France.
Université de Pau et des Pays de l'Adour · FRUniversité Clermont Auvergne · FRIfremer · FRLaboratoire d'Océanographie Microbienne · FRLIttoral ENvironnement et Sociétés · FRMarine Biodiversity Exploitation and Conservation · FRUniversité de Toulon · FRUniversity of Carthage · TN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Benthic microorganisms are key players in the recycling of organic matter and recalcitrant compounds such as polyaromatic hydrocarbons (PAHs) in coastal sediments. Despite their ecological importance, the response of microbial communities to chronic PAH pollution, one of the major threats to coastal ecosystems, has received very little attention. In one of the largest surveys performed so far on coastal sediments, the diversity and composition of microbial communities inhabiting both chronically contaminated and non-contaminated coastal sediments were investigated using high-throughput sequencing on the 18S and 16S rRNA genes. Prokaryotic alpha-diversity showed significant association with salinity, temperature, and organic carbon content. The effect of particle size distribution was strong on eukaryotic diversity. Similarly to alpha-diversity, beta-diversity patterns were strongly influenced by the environmental filter, while PAHs had no influence on the prokaryotic community structure and a weak impact on the eukaryotic community structure at the continental scale. However, at the regional scale, PAHs became the main driver shaping the structure of bacterial and eukaryotic communities. These patterns were not found for PICRUSt predicted prokaryotic functions, thus indicating some degree of functional redundancy. Eukaryotes presented a greater potential for their use as PAH contamination biomarkers, owing to their stronger response at both regional and continental scales.

Indexed as

chronic contaminationcoastal sedimentfunctional diversitymicrobial communitiesPAH

Identifiers

PMID27594854
PMCPMC4990537
OpenAlexW2509630393

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.