Evidence map›Paper›PMID 27594682›Full record

ArticleStructure (London, England : 1993)2016

Peroxiredoxin Catalysis at Atomic Resolution.

Arden Perkins, Derek Parsonage, Kimberly J Nelson, O Maduka Ogba, Paul Ha-Yeon Cheong, Leslie B Poole, P Andrew Karplus

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Additive CHARMM36 Force Field for Nonstandard Amino Acids.Journal of chemical theory and computation · 2021
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Novel hyperoxidation resistance motifs in 2-Cys peroxiredoxins.The Journal of biological chemistry · 2018
    Article
  12. Article
  13. Article
  14. Article
  15. Detection of Reaction Intermediates in MgMethods in enzymology · 2017
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Arden PerkinsDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, OR 97331, USA.
Derek ParsonageDepartment of Biochemistry, Wake Forest School of Medicine, Winston-Salem, NC 27157, USA.
Kimberly J NelsonDepartment of Biochemistry, Wake Forest School of Medicine, Winston-Salem, NC 27157, USA.
O Maduka OgbaDepartment of Chemistry, Oregon State University, Corvallis, OR 97331, USA.
Paul Ha-Yeon CheongDepartment of Chemistry, Oregon State University, Corvallis, OR 97331, USA.
Leslie B PooleDepartment of Biochemistry, Wake Forest School of Medicine, Winston-Salem, NC 27157, USA.
P Andrew KarplusDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, OR 97331, USA. Electronic address: karplusp@science.oregonstate.edu.
Oregon State University · USWake Forest University · US

Funding

Mechanistic Studies of Alkyl Hydroperoxide Reductase and Related Redox SystemsR01GM050389 · NIGMS · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI POOLE, LESLIE B · 1994 to 2013
$4.8M
Mechanisms and Regulation of PeroxiredoxinsR01GM119227 · NIGMS · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI POOLE, LESLIE B · 2016 to 2019
$1.4M
NIGMS NIH HHS R01 GM050389NIGMS NIH HHS R01 GM119227
6 · The paper itself

Abstract

Peroxiredoxins (Prxs) are ubiquitous cysteine-based peroxidases that guard cells against oxidative damage, are virulence factors for pathogens, and are involved in eukaryotic redox regulatory pathways. We have analyzed catalytically active crystals to capture atomic resolution snapshots of a PrxQ subfamily enzyme (from Xanthomonas campestris) proceeding through thiolate, sulfenate, and sulfinate species. These analyses provide structures of unprecedented accuracy for seeding theoretical studies, and reveal conformational intermediates giving insight into the reaction pathway. Based on a highly non-standard geometry seen for the sulfenate intermediate, we infer that the sulfenate formation itself can strongly promote local unfolding of the active site to enhance productive catalysis. Further, these structures reveal that preventing local unfolding, in this case via crystal contacts, results in facile hyperoxidative inactivation even for Prxs normally resistant to such inactivation. This supports previous proposals that conformation-specific inhibitors may be useful for achieving selective inhibition of Prxs that are drug targets.

Indexed as

Bacterial ProteinsCatalysisCatalytic DomainCrystallography, X-RayModels, MolecularPeroxiredoxinsSubstrate SpecificitySulfenic AcidsSulfhydryl CompoundsSulfinic AcidsXanthomonas campestrisBacterial ProteinsPeroxiredoxinsSulfenic AcidsSulfhydryl CompoundsSulfinic Acids

Identifiers

PMID27594682
PMCPMC5241139
OpenAlexW2510319321

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.