Evidence map›Paper›PMID 27594426›Full record

ArticleCell2016

A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes.

Saima M Sidik, Diego Huet, Suresh M Ganesan, My-Hang Huynh, Tim Wang, Armiyaw S Nasamu, Prathapan Thiru, Jeroen P J Saeij, Vern B Carruthers, Jacquin C Niles and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 515 papers.

0numbers the graph read from it
0cells of the map it votes in
515citing papers in PubMed
65.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

515 citing papers in PubMed, 857 citations in OpenAlex.

  1. Article
  2. Article
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  4. Toxoplasma gondii SIR2A Promotes Tachyzoite Invasion via Lysine Deacetylase Activity.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Article
  5. Article
  6. Review
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  9. A pooled image-based CRISPR screen identifies EAF1 as abioRxiv : the preprint server for biology · 2026
    Article
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455 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Saima M SidikWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
Diego HuetWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
Suresh M GanesanDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
My-Hang HuynhDepartment of Microbiology and Immunology, University of Michigan School of Medicine, Ann Arbor, MI 48109, USA.
Tim WangWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139 USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Armiyaw S NasamuDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Prathapan ThiruWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
Jeroen P J SaeijDepartment of Pathology, Microbiology and Immunology, University of California, Davis, Davis, CA 95616, USA.
Vern B CarruthersDepartment of Microbiology and Immunology, University of Michigan School of Medicine, Ann Arbor, MI 48109, USA.
Jacquin C NilesDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Sebastian LouridoWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA. Electronic address: lourido@wi.mit.edu.
Whitehead Institute for Biomedical Research · USMassachusetts Institute of Technology · USUniversity of Michigan–Ann Arbor · USUniversity of California, Davis · US

Funding

MIT Center for Integrative Synthetic BiologyP50GM098792 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI WEISS, RON · 2013 to 2017
$11.0M
MICRONEME FUNCTION IN TOXOPLASMAR01AI046675 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CARRUTHERS, VERNON BRUCE · 2000 to 2021
$6.5M
Toxoplasma strain-specific modulation of mouse immune cellsR01AI080621 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI SAEIJ, JEROEN · 2009 to 2018
$3.6M
Engineered Regulated RNA Localization and Transport in Biological SystemsDP2OD007124 · OD · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI NILES, JACQUIN C · 2010 to 2010
$2.5M
Dissecting essential signaling pathways in apicomplexan parasitesDP5OD017892 · OD · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI LOURIDO, SEBASTIAN · 2013 to 2017
$2.4M
Improving targeted therapies through functional genomic approachesF31CA189437 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI WANG, TIM · 2014 to 2017
$107k
NCI NIH HHS F31 CA189437NIAID NIH HHS R01 AI046675NIAID NIH HHS R01 AI080621NIGMS NIH HHS P50 GM098792NIH HHS DP2 OD007124NIH HHS DP5 OD017892
6 · The paper itself

Abstract

Apicomplexan parasites are leading causes of human and livestock diseases such as malaria and toxoplasmosis, yet most of their genes remain uncharacterized. Here, we present the first genome-wide genetic screen of an apicomplexan. We adapted CRISPR/Cas9 to assess the contribution of each gene from the parasite Toxoplasma gondii during infection of human fibroblasts. Our analysis defines ∼200 previously uncharacterized, fitness-conferring genes unique to the phylum, from which 16 were investigated, revealing essential functions during infection of human cells. Secondary screens identify as an invasion factor the claudin-like apicomplexan microneme protein (CLAMP), which resembles mammalian tight-junction proteins and localizes to secretory organelles, making it critical to the initiation of infection. CLAMP is present throughout sequenced apicomplexan genomes and is essential during the asexual stages of the malaria parasite Plasmodium falciparum. These results provide broad-based functional information on T. gondii genes and will facilitate future approaches to expand the horizon of antiparasitic interventions.

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsGenome-Wide Association StudyHost-Parasite InteractionsApicomplexaCells, CulturedClaudinsFibroblastsGenome, ProtozoanHumansMalaria, FalciparumPlasmodium falciparumProtozoan ProteinsToxoplasmaToxoplasmosisClaudinsProtozoan ProteinsApicomplexan parasiteseukaryotic pathogengenome-wide CRISPR screenhost-cell invasionhost-pathogen interactionsmalariatoxoplasmosis

Identifiers

PMID27594426
PMCPMC5017925
OpenAlexW2511428910

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.