Evidence map›Paper›PMID 27593162›Full record

ArticleDevelopmental cell2016

Congenital Heart Disease Genetics Uncovers Context-Dependent Organization and Function of Nucleoporins at Cilia.

Florencia Del Viso, Fang Huang, Jordan Myers, Madeleine Chalfant, Yongdeng Zhang, Nooreen Reza, Joerg Bewersdorf, C Patrick Lusk, Mustafa K Khokha

Abstract read
In one paragraph

Article in Developmental cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 106 citations in OpenAlex.

  1. Review
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  3. Review
  4. Article
  5. Article
  6. Article
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  8. Article
  9. Evolutionary trajectory for nuclear functions of ciliary transport complex proteins.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  10. Advances in the understanding of nuclear pore complexes in human diseases.Journal of cancer research and clinical oncology · 2024
    Review
  11. Review
  12. Article
  13. Review
  14. Frontiers in genetics · 2024
    Article
  15. Review
  16. Nuclear transport proteins: structure, function, and disease relevance.Signal transduction and targeted therapy · 2023
    Review
  17. Article
  18. Article
  19. Article
  20. Use of Frogs as a Model to Study the Etiology of HLHS.Journal of cardiovascular development and disease · 2023
    Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Florencia Del VisoProgram in Vertebrate Developmental Biology, Departments of Pediatrics and Genetics, Yale University School of Medicine, 333 Cedar Street, New Haven, CT 06520, USA.
Fang HuangDepartment of Cell Biology, Yale University School of Medicine, 333 Cedar Street, New Haven, CT 06520, USA; Weldon School of Biomedical Engineering, College of Engineering, Purdue University, West Lafayette, IN 47907, USA.
Jordan MyersDepartment of Cell Biology, Yale University School of Medicine, 333 Cedar Street, New Haven, CT 06520, USA.
Madeleine ChalfantDepartment of Cell Biology, Yale University School of Medicine, 333 Cedar Street, New Haven, CT 06520, USA.
Yongdeng ZhangDepartment of Cell Biology, Yale University School of Medicine, 333 Cedar Street, New Haven, CT 06520, USA.
Nooreen RezaProgram in Vertebrate Developmental Biology, Departments of Pediatrics and Genetics, Yale University School of Medicine, 333 Cedar Street, New Haven, CT 06520, USA.
Joerg BewersdorfDepartment of Cell Biology, Yale University School of Medicine, 333 Cedar Street, New Haven, CT 06520, USA.
C Patrick LuskDepartment of Cell Biology, Yale University School of Medicine, 333 Cedar Street, New Haven, CT 06520, USA. Electronic address: patrick.lusk@yale.edu.
Mustafa K KhokhaProgram in Vertebrate Developmental Biology, Departments of Pediatrics and Genetics, Yale University School of Medicine, 333 Cedar Street, New Haven, CT 06520, USA. Electronic address: mustafa.khokha@yale.edu.
Yale University · USPurdue University West Lafayette · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Yale Diabetes Research CenterP30DK045735 · NIDDK · YALE UNIVERSITY · PI Kevan C Herold, GERALD I SHULMAN · 1993 to 2026
$44.0M
Skill Development for Diverse Scientific Careers: A New Course Predoctoral Program in Cellular and Molecular BiologyT32GM007223 · NIGMS · YALE UNIVERSITY · PI BASERGA, SUSAN J · 1985 to 2019
$31.0M
New Mechanisms of Heterotaxy and Congenital Heart Disease: Nucleoporins at CiliaR01HL124402 · NHLBI · YALE UNIVERSITY · PI KHOKHA, MUSTAFA K, LUSK, CHARLES PATRICK · 2015 to 2022
$5.5M
A super-resolution microscope for research and educationS10OD020142 · OD · YALE UNIVERSITY · PI NATHANSON, MICHAEL H · 2015 to 2015
$600k
NCATS NIH HHS UL1 TR001863NHLBI NIH HHS R01 HL124402NIDDK NIH HHS P30 DK045735NIGMS NIH HHS T32 GM007223NIH HHS S10 OD020142Wellcome Trust 095927/A/11/ZWellcome Trust 203285/Z/16/Z
6 · The paper itself

Abstract

Human genomics is identifying candidate genes for congenital heart disease (CHD), but discovering the underlying mechanisms remains challenging. In a patient with CHD and heterotaxy (Htx), a disorder of left-right patterning, we previously identified a duplication in Nup188. However, a mechanism to explain how a component of the nuclear pore complex (NPC) could cause Htx/CHD was undefined. Here, we show that knockdown of Nup188 or its binding partner Nup93 leads to a loss of cilia during embryonic development while leaving NPC function largely intact. Many data, including the localization of endogenous Nup188/93 at cilia bases, support their direct role at cilia. Super-resolution imaging of Nup188 shows two barrel-like structures with dimensions and organization incompatible with an NPC-like ring, arguing against a proposed "ciliary pore complex." We suggest that the nanoscale organization and function of nucleoporins are context dependent in a way that is required for the structure of the heart.

Indexed as

AnimalsCiliaGene Knockdown TechniquesGenome, HumanHeart Defects, CongenitalHeterotaxy SyndromeHumansNuclear PoreNuclear Pore Complex ProteinsProtein ConformationProtein Interaction MapsProtein TransportXenopusXenopus ProteinsNuclear Pore Complex ProteinsNup188 protein, XenopusNup93 protein, humanXenopus Proteins3D nanoscopycongenital heart diseaseheterotaxyleft-right patterningnuclear pore complexnucleoporinsuper-resolutionXenopus tropicalis

Identifiers

PMID27593162
PMCPMC5021619
OpenAlexW2518242918

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.