Evidence map›Paper›PMID 27593110›Full record

ArticleCell chemical biology2016

Structural and Biochemical Basis for Intracellular Kinase Inhibition by Src-specific Peptidic Macrocycles.

Saadat Aleem, George Georghiou, Ralph E Kleiner, Kip Guja, Barbara P Craddock, Agatha Lyczek, Alix I Chan, Miguel Garcia-Diaz, W Todd Miller, David R Liu and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell chemical biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

  1. Structural insight into the macrocyclic inhibitor TPX-0022 of c-Met and c-Src.Computational and structural biotechnology journal · 2023
    Article
  2. Article
  3. Crystal structures of green fluorescent protein with the unnatural amino acid 4-nitro-L-phenylalanine.Acta crystallographica. Section F, Structural biology communications · 2018
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Saadat Aleem *Dept. of Physiology and Biophysics, Stony Brook University, Stony Brook, NY 11794-8661, USA.
George Georghiou *Dept. of Pharmacological Sciences, Stony Brook University, Stony Brook, NY 11794-8651, USA.
Ralph E Kleiner *Dept. of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, USA.
Kip GujaDept. of Pharmacological Sciences, Stony Brook University, Stony Brook, NY 11794-8651, USA.
Barbara P CraddockDept. of Physiology and Biophysics, Stony Brook University, Stony Brook, NY 11794-8661, USA.
Agatha LyczekDept. of Pharmacological Sciences, Stony Brook University, Stony Brook, NY 11794-8651, USA.
Alix I ChanDept. of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, USA.
Miguel Garcia-DiazDept. of Pharmacological Sciences, Stony Brook University, Stony Brook, NY 11794-8651, USA.
W Todd MillerDept. of Physiology and Biophysics, Stony Brook University, Stony Brook, NY 11794-8661, USA.
David R LiuDept. of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, USA.
Markus A SeeligerDept. of Pharmacological Sciences, Stony Brook University, Stony Brook, NY 11794-8651, USA.
Stony Brook University · USHoward Hughes Medical Institute · USHarvard University · US

Funding

Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM008444 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI FROHMAN, MICHAEL A. · 1992 to 2024
$12.6M
Dynamics of Ligand Binding and Protein Kinase Regulation_RenewalR35GM119437 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI Markus A Seeliger · 2016 to 2026
$6.5M
Integrating Chemistry and Evolution to Illuminate Biology and Enable Novel TherapeuticsR35GM118062 · NIGMS · HARVARD UNIVERSITY · PI LIU, DAVID R · 2016 to 2025
$6.4M
SUSTRATE SPECIFICITY OF NONRECEPTOR TYROSINE KINASER01CA058530 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI MILLER, W TODD · 1999 to 2018
$3.7M
Mechanisms of mitochondrial transcriptionR01GM100021 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI GARCIA-DIAZ, MIGUEL · 2012 to 2016
$1.5M
Instrumentation grant application for forteBio Octet Red96 Biolayer Interferometry SystemS10OD020155 · OD · STATE UNIVERSITY NEW YORK STONY BROOK · PI SEELIGER, MARKUS A · 2015 to 2015
$204k
Characterization of an essential mitochondrial rRNA methyltransferaseF30ES022930 · NIEHS · STATE UNIVERSITY NEW YORK STONY BROOK · PI GUJA, KIP E · 2013 to 2014
$95k
Howard Hughes Medical InstituteNCI NIH HHS R01 CA058530NIEHS NIH HHS F30 ES022930NIGMS NIH HHS P41 GM111244NIGMS NIH HHS R01 GM100021NIGMS NIH HHS R35 GM118062NIGMS NIH HHS R35 GM119437NIGMS NIH HHS T32 GM008444NIH HHS S10 OD020155
6 · The paper itself

Abstract

Protein kinases are attractive therapeutic targets because their dysregulation underlies many diseases, including cancer. The high conservation of the kinase domain and the evolution of drug resistance, however, pose major challenges to the development of specific kinase inhibitors. We recently discovered selective Src kinase inhibitors from a DNA-templated macrocycle library. Here, we reveal the structural basis for how these inhibitors retain activity against a disease-relevant, drug-resistant kinase mutant, while maintaining Src specificity. We find that these macrocycles display a degree of modularity: two of their three variable groups interact with sites on the kinase that confer selectivity, while the third group interacts with the universally conserved catalytic lysine and thereby retains the ability to inhibit the "gatekeeper" kinase mutant. We also show that these macrocycles inhibit migration of MDA-MB-231 breast tumor cells. Our findings establish intracellular kinase inhibition by peptidic macrocycles, and inform the development of potent and specific kinase inhibitors.

Indexed as

Cell Line, TumorCell MovementDose-Response Relationship, DrugHumansMacrocyclic CompoundsModels, MolecularMolecular StructureOligopeptidesProtein Kinase Inhibitorssrc-Family KinasesStructure-Activity RelationshipMacrocyclic CompoundsOligopeptidesProtein Kinase Inhibitorssrc-Family KinasesSrc peptide

Identifiers

PMID27593110
PMCPMC5096457
OpenAlexW2509244916

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.