Evidence map›Paper›PMID 27591432›Full record

ArticleJournal of experimental botany2016

Spatial and temporal transcriptome changes occurring during flower opening and senescence of the ephemeral hibiscus flower, Hibiscus rosa-sinensis.

Alice Trivellini, Giacomo Cocetta, Donald A Hunter, Paolo Vernieri, Antonio Ferrante

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
8.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 42 citations in OpenAlex.

  1. Review
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  5. Characterization and expression analysis ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2022
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  6. CRISPR/Cas9-Mediated Editing ofFrontiers in plant science · 2022
    Article
  7. Article
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  13. Review
  14. Physiological and Transcriptome Analyses of Early Leaf Senescence forInternational journal of molecular sciences · 2019
    Article
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  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Alice TrivelliniInstitute of Life Science, Scuola Superiore Sant'Anna, Pisa, Italy.ORCID 0000-0001-8001-4098
Giacomo CocettaDepartment of Agricultural and Environmental Sciences, Università degli Studi Milano, Milan, Italy.ORCID 0000-0002-8796-4245
Donald A HunterThe New Zealand Institute for Plant & Food Research Limited, Palmerston North, New Zealand.ORCID 0000-0002-5570-6460
Paolo VernieriDepartment of Agriculture, Food and Environment, Università degli Studi di Pisa, Pisa, Italy.ORCID 0000-0002-4591-0994
Antonio FerranteDepartment of Agricultural and Environmental Sciences, Università degli Studi Milano, Milan, Italy antonio.ferrante@unimi.it.
University of Milan · ITPlant & Food Research · NZScuola Superiore Sant'Anna · ITUniversity of Pisa · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Flowers are complex systems whose vegetative and sexual structures initiate and die in a synchronous manner. The rapidity of this process varies widely in flowers, with some lasting for months while others such as Hibiscus rosa-sinensis survive for only a day. The genetic regulation underlying these differences is unclear. To identify key genes and pathways that coordinate floral organ senescence of ephemeral flowers, we identified transcripts in H. rosa-sinensis floral organs by 454 sequencing. During development, 2053 transcripts increased and 2135 decreased significantly in abundance. The senescence of the flower was associated with increased abundance of many hydrolytic genes, including aspartic and cysteine proteases, vacuolar processing enzymes, and nucleases. Pathway analysis suggested that transcripts altering significantly in abundance were enriched in functions related to cell wall-, aquaporin-, light/circadian clock-, autophagy-, and calcium-related genes. Finding enrichment in light/circadian clock-related genes fits well with the observation that hibiscus floral development is highly synchronized with light and the hypothesis that ageing/senescence of the flower is orchestrated by a molecular clock. Further study of these genes will provide novel insight into how the molecular clock is able to regulate the timing of programmed cell death in tissues.

Indexed as

AgingCalciumCircadian RhythmFlowersGene Expression Regulation, PlantGenes, PlantHibiscusOligonucleotide Array Sequence AnalysisReactive Oxygen SpeciesReverse Transcriptase Polymerase Chain ReactionTranscription FactorsTranscriptomeCalciumReactive Oxygen SpeciesTranscription Factors454 sequencingaquaporinscell walllight and circadian clock signallingmicroarrayovaryPCDpetalstyle-stigma plus stamens.

Identifiers

PMID27591432
PMCPMC5091337
OpenAlexW2517556664

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.