Evidence map›Paper›PMID 27590526›Full record

ArticleBMC evolutionary biology2016

Adaptive patterns in the p53 protein sequence of the hypoxia- and cancer-tolerant blind mole rat Spalax.

Vered Domankevich, Yarden Opatowsky, Assaf Malik, Abraham B Korol, Zeev Frenkel, Irena Manov, Aaron Avivi, Imad Shams

Open access · goldAbstract read
In one paragraph

Article in BMC evolutionary biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. The occurrence of cancer in vertebrates: a mini review.Journal of biological research (Thessalonike, Greece) · 2020
    Review
  5. Article
  6. Computational Approaches to Prioritize Cancer Driver Missense Mutations.International journal of molecular sciences · 2018
    Review
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Vered DomankevichInstitute of Evolution & Department of Evolutionary and Environmental Biology, University of Haifa, Haifa, Israel.
Yarden OpatowskyMina and Everard Goodman Faculty of Life Sciences and Advanced Materials and Nanotechnology Institute, Bar-Ilan University, Ramat-Gan, Israel.
Assaf MalikInstitute of Evolution & Department of Evolutionary and Environmental Biology, University of Haifa, Haifa, Israel.
Abraham B KorolInstitute of Evolution & Department of Evolutionary and Environmental Biology, University of Haifa, Haifa, Israel.
Zeev FrenkelInstitute of Evolution & Department of Evolutionary and Environmental Biology, University of Haifa, Haifa, Israel.
Irena ManovInstitute of Evolution & Department of Evolutionary and Environmental Biology, University of Haifa, Haifa, Israel.
Aaron AviviInstitute of Evolution & Department of Evolutionary and Environmental Biology, University of Haifa, Haifa, Israel.
Imad ShamsInstitute of Evolution & Department of Evolutionary and Environmental Biology, University of Haifa, Haifa, Israel. imad.shams@univ.haifa.ac.il.
University of Haifa · ILBar-Ilan University · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe subterranean blind mole rat, Spalax (genus Nannospalax) endures extreme hypoxic conditions and fluctuations in oxygen levels that threaten DNA integrity. Nevertheless, Spalax is long-lived, does not develop spontaneous cancer, and exhibits an outstanding resistance to carcinogenesis in vivo, as well as anti-cancer capabilities in vitro. We hypothesized that adaptations to similar extreme environmental conditions involve common mechanisms for overcoming stress-induced DNA damage. Therefore, we aimed to identify shared features among species that are adapted to hypoxic stress in the sequence of the tumor-suppressor protein p53, a master regulator of the DNA-damage response (DDR).

resultsWe found that the sequences of p53 transactivation subdomain 2 (TAD2) and tetramerization and regulatory domains (TD and RD) are more similar among hypoxia-tolerant species than expected from phylogeny. Specific positions in these domains composed patterns that are more frequent in hypoxia-tolerant species and have proven to be good predictors of species' classification into stress-related categories. Some of these positions, which are known to be involved in the interactions between p53 and critical DDR proteins, were identified as positively selected. By 3D modeling of p53 interactions with the coactivator p300 and the DNA repair protein RPA70, we demonstrated that, compared to humans, these substitutions potentially reduce the binding of these proteins to Spalax p53.

conclusionsWe conclude that extreme hypoxic conditions may have led to convergent evolutionary adaptations of the DDR via TAD2 and TD/RD domains of p53.

Indexed as

Biological EvolutionDNA RepairAdaptation, PhysiologicalAmino Acid SequenceAnimalsHypoxiaModels, MolecularNeoplasmsOxygenSequence AlignmentSpalaxTumor Suppressor Protein p53OxygenTumor Suppressor Protein p53Cancer resistanceConvergent evolutionHypoxiaLongevityOxidative stressP53RPA70TAD2

Identifiers

PMID27590526
PMCPMC5010716
OpenAlexW2507255273

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.