Evidence map›Paper›PMID 27589924›Full record

ArticleJournal of immunological methods2016

Rapid identification and expression of human TCRs in retrogenic mice.

Maran L Sprouse, Gabriele Blahnik, Thomas Lee, Natalie Tully, Pinaki Banerjee, Eddie A James, Maria J Redondo, Matthew L Bettini, Maria Bettini

Abstract read
In one paragraph

Article in Journal of immunological methods, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Journal of translational autoimmunity · 2021
    Article
  4. A Novel Animal Model of Emphysema Induced by Anti-Elastin Autoimmunity.Journal of immunology (Baltimore, Md. : 1950) · 2019
    Article
  5. Generation of T Cell Receptor Retrogenic Mice.Current protocols in immunology · 2019
    Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Maran L SprouseDepartment of Pediatrics, Section of Diabetes and Endocrinology, McNair Medical Institute, Baylor College of Medicine, Texas Children's Hospital, Houston, TX, USA.
Gabriele BlahnikBenaroya Research Institute at Virginia Mason, Seattle, WA, USA.
Thomas LeeDepartment of Pediatrics, Section of Diabetes and Endocrinology, McNair Medical Institute, Baylor College of Medicine, Texas Children's Hospital, Houston, TX, USA.
Natalie TullyDepartment of Pediatrics, Section of Diabetes and Endocrinology, McNair Medical Institute, Baylor College of Medicine, Texas Children's Hospital, Houston, TX, USA.
Pinaki BanerjeeCenter for Human Immunobiology, Baylor College of Medicine, Texas Children's Hospital, Houston, TX, USA.
Eddie A JamesBenaroya Research Institute at Virginia Mason, Seattle, WA, USA.
Maria J RedondoDepartment of Pediatrics, Section of Diabetes and Endocrinology, Baylor College of Medicine, Texas Children's Hospital, Houston, TX, USA.
Matthew L BettiniDepartment of Pediatrics, Section of Diabetes and Endocrinology, McNair Medical Institute, Baylor College of Medicine, Texas Children's Hospital, Houston, TX, USA.
Maria BettiniDepartment of Pediatrics, Section of Diabetes and Endocrinology, McNair Medical Institute, Baylor College of Medicine, Texas Children's Hospital, Houston, TX, USA. Electronic address: maria.bettini@bcm.edu.
Baylor College of Medicine · USVirginia Mason Medical Center · US

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Michael M Ittmann · 2007 to 2026
$73.9M
Diabetes Endocrinology Research CenterP30DK079638 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI CHAN, LAWRENCE · 2008 to 2012
$6.4M
BD Biosciences Special Order LSRIIS10RR024574 · NCRR · BAYLOR COLLEGE OF MEDICINE · PI LUMPKIN, ELLEN A · 2009 to 2009
$430k
Parameters T-Cell Receptor avidity during thymic selection in autoimmune diabetesK22AI104761 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI BETTINI, MATTHEW · 2014 to 2015
$269k
NCI NIH HHS P30 CA125123NCRR NIH HHS S10 RR024574NIAID NIH HHS K22 AI104761NIDDK NIH HHS P30 DK079638
6 · The paper itself

Abstract

Single-cell paired TCR identification is a powerful tool, but has been limited in its previous incompatibility with further functional analysis. The current protocol describes a method to clone and functionally evaluate in vivo TCRs derived from single antigen-responsive human T cells and monoclonal T cell lines. We have improved upon current PCR-based TCR sequencing protocols by developing primers that allow amplification of human TCRα and TCRβ variable regions, while incorporating specific restriction cut sites for direct subcloning into the template retroviral vector. This streamlined approach for generating human:mouse chimeric TCR vectors allows for rapid TCR expression in humanized-retrogenic (hu-Rg) mice through retroviral mediated stem cell gene transfer. Using widely available techniques and equipment, this method is easily adaptable by most laboratories. This is the first TCR identification protocol that is efficiently combined with subsequent in vivo TCR expression.

Indexed as

Genetic VectorsGene Transfer TechniquesStem Cell TransplantationAnimalsCell SeparationCloning, MolecularDiabetes Mellitus, Type 1GenotypeHEK293 CellsHLA AntigensHumansMice, Inbred NODMice, TransgenicMultiplex Polymerase Chain ReactionPhenotypeReceptors, Antigen, T-Cell, alpha-betaHLA AntigensReceptors, Antigen, T-Cell, alpha-betaHumanHumanized micePCRSingle cellT cell receptorTCR

Identifiers

PMID27589924
PMCPMC5439214
OpenAlexW2516242121

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.