ArticlePloS one2016
Chloroplast Genome Evolution in Actinidiaceae: clpP Loss, Heterogenous Divergence and Phylogenomic Practice.
Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.
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41 citing papers in PubMed, 62 citations in OpenAlex.
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- Decoding the Chloroplast Genome of Korean endemic plant Acer okamotoanum: Comparative Genomics, Phylogenetic Insights, and Potential for Marker Development.Molecular biotechnology · 2026Article
- Characterization of the complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2026Article
- Comparative chloroplast genomics provides insights into the phylogenetic relationships and evolutionary history for Actinidia species.Scientific reports · 2025Article
- Characterization of the complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2025Article
- Complete chloroplast genomes of threeFrontiers in plant science · 2025Article
- The complete chloroplast genome sequence and phylogenetic analysis ofMitochondrial DNA. Part B, Resources · 2025Article
- Complete Chloroplast Genome ofGenes · 2024Article
- Distinctive plastome evolution in carnivorous angiosperms.BMC plant biology · 2023Article
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- More than a spiny morphology: plastome variation in the prickly pear cacti (Opuntieae).Annals of botany · 2023Article
- Sequencing and Phylogenetic Analysis of the Chloroplast Genome of Three Apricot Species.Genes · 2023Article
- The complete chloroplast genome sequences of six Hylotelephium species: Comparative genomic analysis and phylogenetic relationships.PloS one · 2023Article
- Comparative analysis of chloroplast genomes of 29 tomato germplasms: genome structures, phylogenetic relationships, and adaptive evolution.Frontiers in plant science · 2023Article
- A Comparative Genomics Approach for Analysis of Complete Mitogenomes of Five Actinidiaceae Plants.Genes · 2022Article
- Comprehensive analysis of plastid gene expression during fruit development and ripening of kiwifruit.Plant cell reports · 2022Article
- Plastid Phylogenomic Analysis of Tordylieae Tribe (Apiaceae, Apioideae).Plants (Basel, Switzerland) · 2022Article
- The comparative studies of complete chloroplast genomes in Actinidia (Actinidiaceae): novel insights into heterogenous variation, clpP gene annotation and phylogenetic relationships.Molecular genetics and genomics : MGG · 2022Article
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Authors and funding
3 authors at 3 institutions in 2 countries.
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No grant is acknowledged in the PubMed record.
Abstract
Actinidiaceae is a well-known economically important plant family in asterids. To elucidate the chloroplast (cp) genome evolution within this family, here we present complete genomes of three species from two sister genera (Clematoclethra and Actinidia) in the Actinidiaceae via genome skimming technique. Comparative analyses revealed that the genome structure and content were rather conservative in three cp genomes in spite of different inheritance pattern, i.e.paternal in Actinidia and maternal in Clematoclethra. The clpP gene was lacked in all the three sequenced cp genomes examined here indicating that the clpP gene loss is likely a conspicuous synapomorphic characteristic during the cp genome evolution of Actinidiaceae. Comprehensive sequence comparisons in Actinidiaceae cp genomes uncovered that there were apparently heterogenous divergence patterns among the cpDNA regions, suggesting a preferred data-partitioned analysis for cp phylogenomics. Twenty non-coding cpDNA loci with fast evolutionary rates are further identified as potential molecular markers for systematics studies of Actinidiaceae. Moreover, the cp phylogenomic analyses including 31 angiosperm plastomes strongly supported the monophyly of Actinidia, being sister to Clematoclethra in Actinidiaceae which locates in the basal asterids, Ericales.
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