Evidence map›Paper›PMID 27589201›Full record

ArticleAmerican journal of medical genetics. Part A2016

Paternal uniparental disomy with segmental loss of heterozygosity of chromosome 11 are hallmark characteristics of syndromic and sporadic embryonal rhabdomyosarcoma.

Katherine M Robbins, Deborah L Stabley, Jennifer Holbrook, Rebecca Sahraoui, Alexa Sadreameli, Katrina Conard, Laura Baker, Karen W Gripp, Katia Sol-Church

Abstract read
In one paragraph

Article in American journal of medical genetics. Part A, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Case Report: Sequential postzygoticFrontiers in genetics · 2023
    Article
  5. Article
  6. Article
  7. Genomic Classification and Clinical Outcome in Rhabdomyosarcoma: A Report From an International Consortium.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2021
    Article
  8. Article
  9. Review
  10. Article
  11. Germline and sporadic cancers driven by the RAS pathway: parallels and contrasts.Annals of oncology : official journal of the European Society for Medical Oncology · 2020
    Review
  12. Costello syndrome: Clinical phenotype, genotype, and management guidelines.American journal of medical genetics. Part A · 2019
    Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Katherine M RobbinsDepartment of Biomedical Research, Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Deborah L StableyDepartment of Biomedical Research, Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Jennifer HolbrookDepartment of Biomedical Research, Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Rebecca SahraouiDepartment of Biomedical Research, Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Alexa SadreameliDepartment of Biomedical Research, Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Katrina ConardDepartment of Pathology, Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Laura BakerDivision of Medical Genetics, Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Karen W GrippDivision of Medical Genetics, Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Katia Sol-ChurchDepartment of Biomedical Research, Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Alfred I. duPont Hospital for Children · US

Funding

Predictive Modeling & Optimal Control Framework for Model-Based Epidemic Response in DelawareP20GM103446 · NIGMS · UNIVERSITY OF DELAWARE · PI Anjana Narayan Bhat · 2012 to 2026
$67.2M
Center for Pediatric ResearchP20GM103464 · NIGMS · NEMOURS CHILDREN'S HOSPITAL, DELAWARE · PI SHAFFER, THOMAS H · 2012 to 2014
$5.6M
Center for Pediatric Research Pilot ProgramP30GM114736 · NIGMS · NEMOURS CHILDREN'S HOSPITAL, DELAWARE · PI SHAFFER, THOMAS H · 2015 to 2019
$5.1M
NIGMS NIH HHS P20 GM103446NIGMS NIH HHS P20 GM103464NIGMS NIH HHS P30 GM114736
6 · The paper itself

Abstract

Costello syndrome (CS) arises from a typically paternally derived germline mutation in the proto-oncogene HRAS, and is considered a rasopathy. CS results in failure-to-thrive, intellectual disabilities, short stature, coarse facial features, skeletal abnormalities, congenital heart disease, and a predisposition for cancer, most commonly embryonal rhabdomyosarcoma (ERMS). The goal of this study was to characterize CS ERMS at the molecular level and to determine how divergent it is from sporadic ERMS. We characterized eleven ERMS tumors from eight unrelated CS patients, carrying paternally derived HRAS c.34G>A (p.Gly12Ser; 6) or c.35G>C (p.Gly12Ala; 2) mutations. Loss of heterozygosity (LOH) was evaluated in all CS ERMS by microarray and/or short tandem repeat (STR) markers spanning the entire chromosome 11. Eight CS ERMS tumors displayed complete paternal uniparental disomy of chromosome 11 (pUPD11), whereas two displayed UPD only at 11p and a second primary ERMS tumor showed UPD limited to 11p15.5, the classical hallmark for ERMS. Three sporadic ERMS cell lines (RD, Rh36, Rh18) and eight formalin fixed paraffin embedded (FFPE) ERMS tumors were also analyzed for RAS mutations and LOH status. We found a higher than anticipated frequency of RAS mutations (HRAS or NRAS; 50%) in sporadic ERMS cell lines/tumors. Unexpectedly, complete uniparental disomy (UPD11) was observed in five specimens, while the other six showed LOH extending across the p and q arms of chromosome 11. In this study, we are able to clearly demonstrate complete UPD11 in both syndromic and sporadic ERMS. © 2016 Wiley Periodicals, Inc.

Indexed as

AdolescentChildChild, PreschoolChromosomes, Human, Pair 11Costello SyndromeFemaleGenotypeGerm-Line MutationHumansInfantLoss of HeterozygosityProto-Oncogene MasProto-Oncogene Proteins p21(ras)Rhabdomyosarcoma, EmbryonalUniparental DisomyHRAS protein, humanMAS1 protein, humanProto-Oncogene MasProto-Oncogene Proteins p21(ras)11p15.5chromosome 11costello syndromeembryonal rhabdomyosarcomaloss of heterozygosityRAS mutationsuniparental disomy

Identifiers

PMID27589201
PMCPMC5130350
OpenAlexW2509990009

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.