Evidence map›Paper›PMID 27588903›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Class II major histocompatibility complex mutant mice to study the germ-line bias of T-cell antigen receptors.

Daniel Silberman, Sai Harsha Krovi, Kathryn D Tuttle, James Crooks, Richard Reisdorph, Janice White, James Gross, Jennifer L Matsuda, Laurent Gapin, Philippa Marrack and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Review
  3. MHC-II alleles shape the CDR3 repertoires of conventional and regulatory naïve CD4Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  4. MHC Restriction: Where Are We Now?Viral immunology · 2020
    Article
  5. Inherent reactivity of unselected TCR repertoires to peptide-MHC molecules.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  6. Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Daniel SilbermanDepartment of Biomedical Research, National Jewish Health, Denver, CO 80206; Department of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO 80045;
Sai Harsha KroviDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO 80045;
Kathryn D TuttleDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO 80045;
James CrooksDivision of Biostatistics and Bioinformatics, National Jewish Health, Denver, CO 80206;
Richard ReisdorphPharmaceutical Sciences, University of Colorado School of Medicine, Aurora, CO 80045;
Janice WhiteDepartment of Biomedical Research, National Jewish Health, Denver, CO 80206;
James GrossDepartment of Biomedical Research, National Jewish Health, Denver, CO 80206;
Jennifer L MatsudaDepartment of Biomedical Research, National Jewish Health, Denver, CO 80206;
Laurent GapinDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO 80045;
Philippa MarrackDepartment of Biomedical Research, National Jewish Health, Denver, CO 80206; Department of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO 80045; Howard Hughes Medical Institute, National Jewish Health, Denver, CO 80206 marrackp@njhealth.org kapplerj@njhealth.org.
John W KapplerDepartment of Biomedical Research, National Jewish Health, Denver, CO 80206; Department of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO 80045; Howard Hughes Medical Institute, National Jewish Health, Denver, CO 80206 marrackp@njhealth.org kapplerj@njhealth.org.
University of Colorado Denver · USNational Jewish Health · USHoward Hughes Medical Institute · US

Funding

TRAINING PROGRAM IN IMMUNOLOGYT32AI007405 · NIAID · UNIVERSITY OF COLORADO DENVER · PI Laurel L Lenz, Raul Martin Torres · 1991 to 2026
$10.5M
CHARACTERISTICS OF T CELL RECEPTORSR01AI018785 · NIAID · NATIONAL JEWISH HEALTH · PI MARRACK, PHILIPPA C. · 1985 to 2022
$7.3M
iNKT Cell Recognition of Endogenous Lipid AntigensR01AI092108 · NIAID · UNIVERSITY OF COLORADO DENVER · PI GAPIN, LAURENT · 2011 to 2014
$1.5M
CHARACTERISTICS OF T-CELL RECEPTORSR37AI018785 · NIAID · NATIONAL JEWISH HEALTH · PI MARRACK, PHILIPPA C. · 1992 to 2001
$522k
Inherent reactivity of T cell antigen receptors for MHC moleculesR21AI121761 · NIAID · UNIVERSITY OF COLORADO DENVER · PI GAPIN, LAURENT · 2016 to 2017
$421k
Characteristics of T Cell ReceptorsR56AI018785 · NIAID · NATIONAL JEWISH HEALTH · PI MARRACK, PHILIPPA C. · 2012 to 2012
$410k
NIAID NIH HHS R01 AI018785NIAID NIH HHS R01 AI092108NIAID NIH HHS R21 AI121761NIAID NIH HHS R37 AI018785NIAID NIH HHS R56 AI018785NIAID NIH HHS T32 AI007405
6 · The paper itself

Abstract

The interaction of αβ T-cell antigen receptors (TCRs) with peptides bound to MHC molecules lies at the center of adaptive immunity. Whether TCRs have evolved to react with MHC or, instead, processes in the thymus involving coreceptors and other molecules select MHC-specific TCRs de novo from a random repertoire is a longstanding immunological question. Here, using nuclease-targeted mutagenesis, we address this question in vivo by generating three independent lines of knockin mice with single-amino acid mutations of conserved class II MHC amino acids that often are involved in interactions with the germ-line-encoded portions of TCRs. Although the TCR repertoire generated in these mutants is similar in size and diversity to that in WT mice, the evolutionary bias of TCRs for MHC is suggested by a shift and preferential use of some TCR subfamilies over others in mice expressing the mutant class II MHCs. Furthermore, T cells educated on these mutant MHC molecules are alloreactive to each other and to WT cells, and vice versa, suggesting strong functional differences among these repertoires. Taken together, these results highlight both the flexibility of thymic selection and the evolutionary bias of TCRs for MHC.

Indexed as

Amino Acid SequenceAnimalsGerm CellsHistocompatibility Antigens Class IIMajor Histocompatibility ComplexMicePeptidesReceptors, Antigen, T-Cell, alpha-betaThymus GlandT-LymphocytesHistocompatibility Antigens Class IIPeptidesReceptors, Antigen, T-Cell, alpha-betaevolutionMHCmutationT-cell receptorvariable region

Identifiers

PMID27588903
PMCPMC5035841
OpenAlexW2514314777

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.