Evidence map›Paper›PMID 27588520›Full record

ArticleBlood cancer journal2016

A DNA target-enrichment approach to detect mutations, copy number changes and immunoglobulin translocations in multiple myeloma.

N Bolli, Y Li, V Sathiaseelan, K Raine, D Jones, P Ganly, F Cocito, G Bignell, M A Chapman, A S Sperling and 5 more

Open access · goldAbstract read
In one paragraph

Article in Blood cancer journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 76 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 5 countries.

N BolliCancer Genome Project, Wellcome Trust Sanger Institute, Cambridge, UK.ORCID 0000-0002-1018-5139
Y LiCancer Genome Project, Wellcome Trust Sanger Institute, Cambridge, UK.
V SathiaseelanCancer Genome Project, Wellcome Trust Sanger Institute, Cambridge, UK.
K RaineCancer Genome Project, Wellcome Trust Sanger Institute, Cambridge, UK.
D JonesCancer Genome Project, Wellcome Trust Sanger Institute, Cambridge, UK.
P GanlyDepartment of Pathology (UOC), University of Otago, Christchurch, New Zealand.
F CocitoDivision of Hematology, Fondazione IRCCS Policlinico San Matteo di Pavia, Pavia, Italy.
G BignellCancer Genome Project, Wellcome Trust Sanger Institute, Cambridge, UK.
M A ChapmanDepartment of Haematology, University of Cambridge, Cambridge, UK.
A S SperlingJerome Lipper Multiple Myeloma Center, Department of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.
K C AndersonJerome Lipper Multiple Myeloma Center, Department of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.
H Avet-LoiseauUnité de Genomique du Myelome, Centre Hospitalier Universitaire Rangueil, Toulouse, France.
S MinvielleHematology Department, Centre de Recherche en Cancerologie Nantes-Angers Unité Mixte de Recherche INSERM 892-Centre National de la Recherche Scientifique 6299 and Institut de Recherche Therapeutique de l'Université de Nantes, Nantes, France.
P J CampbellCancer Genome Project, Wellcome Trust Sanger Institute, Cambridge, UK.
N C MunshiJerome Lipper Multiple Myeloma Center, Department of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.
Wellcome Sanger Institute · GBHarvard University · USInserm · FRPoliclinico San Matteo Fondazione · ITUniversity of Cambridge · GBUniversity of Otago · NZ

Funding

Trageting the Multiple Myeloma EpigenomeP50CA100707 · NCI · DANA-FARBER CANCER INSTITUTE · PI ANDERSON, KENNETH C., MUNSHI, NIKHIL C. · 2003 to 2023
$45.0M
Targeting Genomic Instability and Evolution in MyelomaP01CA155258 · NCI · DANA-FARBER CANCER INST · PI Jill Corre · 2011 to 2026
$32.5M
NCI NIH HHS P01 CA155258NCI NIH HHS P50 CA100707Wellcome TrustWellcome Trust 077012/Z/05/Z
6 · The paper itself

Abstract

Genomic lesions are not investigated during routine diagnostic workup for multiple myeloma (MM). Cytogenetic studies are performed to assess prognosis but with limited impact on therapeutic decisions. Recently, several recurrently mutated genes have been described, but their clinical value remains to be defined. Therefore, clinical-grade strategies to investigate the genomic landscape of myeloma samples are needed to integrate new and old prognostic markers. We developed a target-enrichment strategy followed by next-generation sequencing (NGS) to streamline simultaneous analysis of gene mutations, copy number changes and immunoglobulin heavy chain (IGH) translocations in MM in a high-throughput manner, and validated it in a panel of cell lines. We identified 548 likely oncogenic mutations in 182 genes. By integrating published data sets of NGS in MM, we retrieved a list of genes with significant relevance to myeloma and found that the mutational spectrum of primary samples and MM cell lines is partially overlapping. Gains and losses of chromosomes, chromosomal segments and gene loci were identified with accuracy comparable to conventional arrays, allowing identification of lesions with known prognostic significance. Furthermore, we identified IGH translocations with high positive and negative predictive value. Our approach could allow the identification of novel biomarkers with clinical relevance in myeloma.

Indexed as

DNA Copy Number VariationsMutationTranslocation, GeneticAllelesCell Line, TumorGene FrequencyGene Rearrangement, B-Lymphocyte, Heavy ChainHigh-Throughput Nucleotide SequencingHumansImmunoglobulin Heavy ChainsLoss of HeterozygosityMultiple MyelomaReproducibility of ResultsImmunoglobulin Heavy Chains

Identifiers

PMID27588520
PMCPMC5056967
OpenAlexW2509664812

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.