Evidence map›Paper›PMID 27587810›Full record

ArticleGenome announcements2016

High-Quality Genome Assembly and Annotation for Plasmodium coatneyi, Generated Using Single-Molecule Real-Time PacBio Technology.

Jung-Ting Chien, Suman B Pakala, Juliana A Geraldo, Stacey A Lapp, Jay C Humphrey, John W Barnwell, Jessica C Kissinger, Mary R Galinski

Open access · diamondAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genome announcements, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
5.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Frontiers in cellular and infection microbiology · 2022
    Article
  6. Article
  7. Variation in selective constraints along the Plasmodium life cycle.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2021
    Article
  8. Review
  9. Ape Origins of Human Malaria.Annual review of microbiology · 2020
    Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Jung-Ting ChienInternational Center for Malaria Research, Education and Development, Emory Vaccine Center, Yerkes National Primate Research Center, Emory University, Atlanta, Georgia, USA Malaria Host-Pathogen Interaction Center, Emory University, Atlanta, Georgia, USA.
Suman B PakalaDepartment of Genetics, Institute of Bioinformatics, Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, Georgia, USA Malaria Host-Pathogen Interaction Center, Emory University, Atlanta, Georgia, USA.
Juliana A GeraldoBiosystems Informatics & Genomics, René Rachou Research Center (CPqRR-FIOCRUZ), Belo Horizonte, Minas Gerais, Brazil.
Stacey A LappInternational Center for Malaria Research, Education and Development, Emory Vaccine Center, Yerkes National Primate Research Center, Emory University, Atlanta, Georgia, USA Malaria Host-Pathogen Interaction Center, Emory University, Atlanta, Georgia, USA.
Jay C HumphreyDepartment of Genetics, Institute of Bioinformatics, Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, Georgia, USA Malaria Host-Pathogen Interaction Center, Emory University, Atlanta, Georgia, USA.
John W BarnwellMalaria Branch, Division of Parasitic Diseases and Malaria, Centers for Disease Control and Prevention, Atlanta, Georgia, USA Malaria Host-Pathogen Interaction Center, Emory University, Atlanta, Georgia, USA.
Jessica C KissingerDepartment of Genetics, Institute of Bioinformatics, Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, Georgia, USA Malaria Host-Pathogen Interaction Center, Emory University, Atlanta, Georgia, USA.
Mary R GalinskiInternational Center for Malaria Research, Education and Development, Emory Vaccine Center, Yerkes National Primate Research Center, Emory University, Atlanta, Georgia, USA Division of Infectious Diseases, Department of Medicine, Emory University, Atlanta, Georgia, USA Malaria Host-Pathogen Interaction Center, Emory University, Atlanta, Georgia, USA mgalins@emory.edu.
Emory University · USDivision of Parasitic Diseases and Malaria · USFundação Oswaldo Cruz · BRUniversity of Georgia · US

Funding

Yerkes National Primate Research Center Role of type-I IFN in regulating COVID-19 induced inflammation and pathogenesisP51OD011132 · OD · EMORY UNIVERSITY · PI Joon Sup Lee · 2012 to 2026
$167.0M
NIAID NIH HHS HHSN272201200031CNIH HHS P51 OD011132
6 · The paper itself

Abstract

Plasmodium coatneyi is a protozoan parasite species that causes simian malaria and is an excellent model for studying disease caused by the human malaria parasite, P. falciparum Here we report the complete (nontelomeric) genome sequence of P. coatneyi Hackeri generated by the application of only Pacific Biosciences RS II (PacBio RS II) single-molecule real-time (SMRT) high-resolution sequence technology and assembly using the Hierarchical Genome Assembly Process (HGAP). This is the first Plasmodium genome sequence reported to use only PacBio technology. This approach has proven to be superior to short-read only approaches for this species.

Identifiers

PMID27587810
PMCPMC5009967
OpenAlexW2511719247

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.