Evidence map›Paper›PMID 27587280›Full record

ArticleAging2016

Analysis of the machinery and intermediates of the 5hmC-mediated DNA demethylation pathway in aging on samples from the MARK-AGE Study.

Elisabetta Valentini, Michele Zampieri, Marco Malavolta, Maria Giulia Bacalini, Roberta Calabrese, Tiziana Guastafierro, Anna Reale, Claudio Franceschi, Antti Hervonen, Bernhard Koller and 14 more

Open access · hybridAbstract read
In one paragraph

Article in Aging, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 67 citations in OpenAlex.

  1. Article
  2. Review
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  12. Review
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  14. Article
  15. DNA Hydroxymethylation Levels Are Altered in Blood Cells From Down Syndrome Persons Enrolled in the MARK-AGE Project.The journals of gerontology. Series A, Biological sciences and medical sciences · 2018
    Article
  16. Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  17. Revisiting the genomic hypomethylation hypothesis of aging.Annals of the New York Academy of Sciences · 2018
    Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 16 institutions in 9 countries.

Elisabetta ValentiniDepartment of Cellular Biotechnologies and Hematology, Faculty of Pharmacy and Medicine, Sapienza University of Rome, Rome 00161, Italy.
Michele ZampieriDepartment of Cellular Biotechnologies and Hematology, Faculty of Pharmacy and Medicine, Sapienza University of Rome, Rome 00161, Italy.
Marco MalavoltaNational Institute of Health and Science on Aging (INRCA), Nutrition and Ageing Centre, Scientific and Technological Research Area, 60100 Ancona, Italy.
Maria Giulia BacaliniDepartment of Experimental, Diagnostic and Specialty Medicine, Alma Mater Studiorum-University of Bologna, Bologna 40126, Italy.
Roberta CalabreseDepartment of Cellular Biotechnologies and Hematology, Faculty of Pharmacy and Medicine, Sapienza University of Rome, Rome 00161, Italy.
Tiziana GuastafierroDepartment of Cellular Biotechnologies and Hematology, Faculty of Pharmacy and Medicine, Sapienza University of Rome, Rome 00161, Italy.
Anna RealeDepartment of Cellular Biotechnologies and Hematology, Faculty of Pharmacy and Medicine, Sapienza University of Rome, Rome 00161, Italy.
Claudio FranceschiDepartment of Experimental, Diagnostic and Specialty Medicine, Alma Mater Studiorum-University of Bologna, Bologna 40126, Italy.
Antti HervonenThe School of Medicine, The University of Tampere, 33014 Tampere, Finland.
Bernhard KollerDepartment for Internal Medicine, University Teaching Hospital Hall in Tirol, Tirol, Austria.
Jürgen BernhardtBioTeSys GmbH, 73728 Esslingen, Germany.
P Eline SlagboomDepartment of Molecular Epidemiology, Leiden University Medical Centre, Leiden, The Netherlands.
Olivier ToussaintUniversity of Namur, Research Unit on Cellular Biology, Namur B-5000, Belgium.
Ewa SikoraLaboratory of the Molecular Bases of Ageing, Nencki Institute of Experimental Biology, Polish Academy of Sciences, 02-093 Warsaw, Poland.
Efstathios S GonosNational Hellenic Research Foundation, Institute of Biology, Medicinal Chemistry and Biotechnology, Athens, Greece.
Nicolle BreusingInstitute of Nutritional Medicine (180c), University of Hohenheim, 70599 Stuttgart, Gemany.
Tilman GruneGerman Institute of Human Nutrition Potsdam-Rehbruecke (DIfE), 14558 Nuthetal, Germany.
Eugène JansenCentre for Health Protection, National Institute for Public Health and the Environment, 3720 BA Bilthoven, The Netherlands.
Martijn E T DolléCentre for Health Protection, National Institute for Public Health and the Environment, 3720 BA Bilthoven, The Netherlands.
María Moreno-VillanuevaMolecular Toxicology Group, Department of Biology, University of Konstanz, 78457 Konstanz, Germany.
Thilo SindlingerMolecular Toxicology Group, Department of Biology, University of Konstanz, 78457 Konstanz, Germany.
Alexander BürkleMolecular Toxicology Group, Department of Biology, University of Konstanz, 78457 Konstanz, Germany.
Fabio CiccaroneDepartment of Biology, University of Rome "Tor Vergata", 00133 Rome, Italy.
Paola CaiafaDepartment of Cellular Biotechnologies and Hematology, Faculty of Pharmacy and Medicine, Sapienza University of Rome, Rome 00161, Italy.
Sapienza University of Rome · ITUniversity of Konstanz · DEIstituto Pasteur · ITMetropolitan University · BDNational Institute for Public Health and the Environment · NLUniversity of Bologna · ITBioTeSys (Germany) · DEGerman Institute of Human Nutrition · DEInstytut Biologii Doświadczalnej im. Marcelego Nenckiego · PLIstituto Nazionale di Riposo e Cura per Anziani · ITLeiden University Medical Center · NLNational Hellenic Research Foundation · GRTampere University · FITirol Kliniken · ATUniversity of Hohenheim · DEUniversity of Namur · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gradual changes in the DNA methylation landscape occur throughout aging virtually in all human tissues. A widespread reduction of 5-methylcytosine (5mC), associated with highly reproducible site-specific hypermethylation, characterizes the genome in aging. Therefore, an equilibrium seems to exist between general and directional deregulating events concerning DNA methylation controllers, which may underpin the age-related epigenetic changes. In this context, 5mC-hydroxylases (TET enzymes) are new potential players. In fact, TETs catalyze the stepwise oxidation of 5mC to 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC) and 5-carboxylcytosine (5caC), driving the DNA demethylation process based on thymine DNA glycosylase (TDG)-mediated DNA repair pathway. The present paper reports the expression of DNA hydroxymethylation components, the levels of 5hmC and of its derivatives in peripheral blood mononuclear cells of age-stratified donors recruited in several European countries in the context of the EU Project 'MARK-AGE'. The results provide evidence for an age-related decline of

Indexed as

DNA MethylationGene Expression Regulation5-MethylcytosineAdultAgedAgingDioxygenasesFemaleGene ExpressionHumansLeukocytes, MononuclearMaleMiddle AgedMixed Function OxygenasesProto-Oncogene Proteins5-MethylcytosineDioxygenasesMixed Function OxygenasesProto-Oncogene ProteinsTET1 protein, humanTET3 protein, humanagingDNA hydroxymethylationgenesTETTDG

Identifiers

PMID27587280
PMCPMC5076444
OpenAlexW2515637438

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.