Evidence map›Paper›PMID 27586495›Full record

ArticleScientific reports2016

Comparative transcriptome analysis of unripe and mid-ripe fruit of Mangifera indica (var. "Dashehari") unravels ripening associated genes.

Smriti Srivastava, Rajesh K Singh, Garima Pathak, Ridhi Goel, Mehar Hasan Asif, Aniruddha P Sane, Vidhu A Sane

Open access · goldAbstract readComparative Study
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
8.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Molecular Insights into Abiotic Stresses in Mango.Plants (Basel, Switzerland) · 2023
    Review
  3. Article
  4. Article
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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Smriti SrivastavaCSIR- National Botanical Research Institute, Lucknow, 226001, India.
Rajesh K SinghUmeå Plant Science Centre, Umea, Sweden.
Garima PathakCSIR- National Botanical Research Institute, Lucknow, 226001, India.
Ridhi GoelCSIR- National Botanical Research Institute, Lucknow, 226001, India.
Mehar Hasan AsifCSIR- National Botanical Research Institute, Lucknow, 226001, India.
Aniruddha P SaneCSIR- National Botanical Research Institute, Lucknow, 226001, India.
Vidhu A SaneCSIR- National Botanical Research Institute, Lucknow, 226001, India.
National Botanical Research Institute · INAcademy of Scientific and Innovative Research · INUmeå Plant Science Centre · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ripening in mango is under a complex control of ethylene. In an effort to understand the complex spatio-temporal control of ripening we have made use of a popular N. Indian variety "Dashehari" This variety ripens from the stone inside towards the peel outside and forms jelly in the pulp in ripe fruits. Through a combination of 454 and Illumina sequencing, a transcriptomic analysis of gene expression from unripe and midripe stages have been performed in triplicates. Overall 74,312 unique transcripts with ≥1 FPKM were obtained. The transcripts related to 127 pathways were identified in "Dashehari" mango transcriptome by the KEGG analysis. These pathways ranged from detoxification, ethylene biosynthesis, carbon metabolism and aromatic amino acid degradation. The transcriptome study reveals differences not only in expression of softening associated genes but also those that govern ethylene biosynthesis and other nutritional characteristics. This study could help to develop ripening related markers for selective breeding to reduce the problems of excess jelly formation during softening in the "Dashehari" variety.

Indexed as

Gene Expression ProfilingGene Expression Regulation, PlantGenes, PlantCell WallEthylenesFruitGene OntologyMangiferaMolecular Sequence AnnotationPigmentationReal-Time Polymerase Chain ReactionReproducibility of ResultsSignal TransductionethyleneEthylenes

Identifiers

PMID27586495
PMCPMC5009307
OpenAlexW2509326224

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.