Evidence map›Paper›PMID 27586347›Full record

ArticleMethods in enzymology2016

Design of Heteronuclear Metalloenzymes.

A Bhagi-Damodaran, P Hosseinzadeh, E Mirts, J Reed, I D Petrik, Y Lu

Open access · greenAbstract read
In one paragraph

Article in Methods in enzymology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
3.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Artificial Heme Enzymes for the Construction of Gold-Based Biomaterials.International journal of molecular sciences · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

A Bhagi-DamodaranUniversity of Illinois at Urbana-Champaign, Urbana, IL, United States.
P HosseinzadehUniversity of Illinois at Urbana-Champaign, Urbana, IL, United States.
E MirtsUniversity of Illinois at Urbana-Champaign, Urbana, IL, United States.
J ReedUniversity of Illinois at Urbana-Champaign, Urbana, IL, United States.
I D PetrikUniversity of Illinois at Urbana-Champaign, Urbana, IL, United States.
Y LuUniversity of Illinois at Urbana-Champaign, Urbana, IL, United States. Electronic address: yi-lu@illinois.edu.
University of Illinois Urbana-Champaign · US

Funding

DESIGNING HETERONUCLEAR METALLOENZYMESR01GM062211 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI LU, YI · 2001 to 2021
$5.1M
NIGMS NIH HHS R01 GM062211
6 · The paper itself

Abstract

Heteronuclear metalloenzymes catalyze some of the most fundamentally interesting and practically useful reactions in nature. However, the presence of two or more metal ions in close proximity in these enzymes makes them more difficult to prepare and study than homonuclear metalloenzymes. To meet these challenges, heteronuclear metal centers have been designed into small and stable proteins with rigid scaffolds to understand how these heteronuclear centers are constructed and the mechanism of their function. This chapter describes methods for designing heterobinuclear metal centers in a protein scaffold by giving specific examples of a few heme-nonheme bimetallic centers engineered in myoglobin and cytochrome c peroxidase. We provide step-by-step procedures on how to choose the protein scaffold, design a heterobinuclear metal center in the protein scaffold computationally, incorporate metal ions into the protein, and characterize the resulting metalloproteins, both structurally and functionally. Finally, we discuss how an initial design can be further improved by rationally tuning its secondary coordination sphere, electron/proton transfer rates, and the substrate affinity.

Indexed as

CatalysisCytochrome-c PeroxidaseHemeIonsMetalloproteinsMetalsMyoglobinOxidation-ReductionProtein EngineeringCytochrome-c PeroxidaseHemeIonsMetalloproteinsMetalsMyoglobinBiomimetic modelsBiosynthetic modelsHeme–copper oxidaseManganese peroxidaseMetalloprotein designNitric oxide reductaseOxygen activationProtein designProtein engineeringSecondary sphere interactions

Identifiers

PMID27586347
PMCPMC5156654
OpenAlexW2504464209

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.