Evidence map›Paper›PMID 27586341›Full record

ArticleMethods in enzymology2016

De Novo Construction of Redox Active Proteins.

C C Moser, M M Sheehan, N M Ennist, G Kodali, C Bialas, M T Englander, B M Discher, P L Dutton

Abstract read
In one paragraph

Article in Methods in enzymology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
5.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Research square · 2023
    Article
  3. Article
  4. Article
  5. Catalysis and Electron Transfer inChemical reviews · 2022
    Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. An Artificial Heme Enzyme for Cyclopropanation Reactions.Angewandte Chemie (International ed. in English) · 2018
    Article
  11. Article
  12. Article
  13. Engineering an Artificial Flavoprotein Magnetosensor.Journal of the American Chemical Society · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

C C MoserUniversity of Pennsylvania, Philadelphia, PA, United States.
M M SheehanUniversity of Pennsylvania, Philadelphia, PA, United States.
N M EnnistUniversity of Pennsylvania, Philadelphia, PA, United States.
G KodaliUniversity of Pennsylvania, Philadelphia, PA, United States.
C BialasUniversity of Pennsylvania, Philadelphia, PA, United States.
M T EnglanderUniversity of Pennsylvania, Philadelphia, PA, United States.
B M DischerUniversity of Pennsylvania, Philadelphia, PA, United States.
P L DuttonUniversity of Pennsylvania, Philadelphia, PA, United States. Electronic address: dutton@mail.med.upenn.edu.
University of Pennsylvania · US

Funding

STRUCTURAL BIOLOGY TRAINING PROGRAMT32GM008275 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI WAND, A. JOSHUA · 1988 to 2018
$6.0M
NIGMS NIH HHS T32 GM008275
6 · The paper itself

Abstract

Relatively simple principles can be used to plan and construct de novo proteins that bind redox cofactors and participate in a range of electron-transfer reactions analogous to those seen in natural oxidoreductase proteins. These designed redox proteins are called maquettes. Hydrophobic/hydrophilic binary patterning of heptad repeats of amino acids linked together in a single-chain self-assemble into 4-alpha-helix bundles. These bundles form a robust and adaptable frame for uncovering the default properties of protein embedded cofactors independent of the complexities introduced by generations of natural selection and allow us to better understand what factors can be exploited by man or nature to manipulate the physical chemical properties of these cofactors. Anchoring of redox cofactors such as hemes, light active tetrapyrroles, FeS clusters, and flavins by His and Cys residues allow cofactors to be placed at positions in which electron-tunneling rates between cofactors within or between proteins can be predicted in advance. The modularity of heptad repeat designs facilitates the construction of electron-transfer chains and novel combinations of redox cofactors and new redox cofactor assisted functions. Developing de novo designs that can support cofactor incorporation upon expression in a cell is needed to support a synthetic biology advance that integrates with natural bioenergetic pathways.

Indexed as

Amino AcidsElectronsHemeHydrophobic and Hydrophilic InteractionsOxidation-ReductionProtein Conformation, alpha-HelicalProtein EngineeringProteinsProtein Structure, SecondaryTetrapyrrolesAmino AcidsHemeProteinsTetrapyrrolesDe novo proteinElectron-transfer proteinElectron tunnelingHelical bundleProtein cofactorsProtein designRedox cofactor

Identifiers

PMID27586341
PMCPMC5123760
OpenAlexW2499540264

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.