Evidence map›Paper›PMID 27586084›Full record

ArticleActa neuropathologica communications2016

Comprehensive protein tyrosine phosphatase mRNA profiling identifies new regulators in the progression of glioma.

Annika M Bourgonje, Kiek Verrijp, Jan T G Schepens, Anna C Navis, Jolanda A F Piepers, Chantal B C Palmen, Monique van den Eijnden, Rob Hooft van Huijsduijnen, Pieter Wesseling, William P J Leenders and 1 more

Open access · goldAbstract read
In one paragraph

Article in Acta neuropathologica communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 27 citations in OpenAlex.

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  11. Association ofBioMed research international · 2022
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  13. A Review of DUSP26: Structure, Regulation and Relevance in Human Disease.International journal of molecular sciences · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 3 countries.

Annika M BourgonjeDepartment of Cell Biology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Geert Grooteplein 26, 6525, GA, Nijmegen, The Netherlands.
Kiek VerrijpDepartment of Pathology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, The Netherlands.
Jan T G SchepensDepartment of Cell Biology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Geert Grooteplein 26, 6525, GA, Nijmegen, The Netherlands.
Anna C NavisDepartment of Pathology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, The Netherlands.
Jolanda A F PiepersDepartment of Cell Biology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Geert Grooteplein 26, 6525, GA, Nijmegen, The Netherlands.
Chantal B C PalmenDepartment of Cell Biology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Geert Grooteplein 26, 6525, GA, Nijmegen, The Netherlands.
Monique van den EijndenMerck Serono S.A, Geneva, Switzerland.
Rob Hooft van HuijsduijnenMerck Serono S.A, Geneva, Switzerland.
Pieter WesselingDepartment of Pathology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, The Netherlands.
William P J LeendersDepartment of Pathology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, The Netherlands.
Wiljan J A J HendriksDepartment of Cell Biology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Geert Grooteplein 26, 6525, GA, Nijmegen, The Netherlands. wiljanjaj.hendriks@radboudumc.nl.
Radboud Institute for Molecular Life Sciences · NLMerck Serono (Switzerland) · CHUniversity Medical Center · USAmsterdam UMC Location VUmc · NLRadboud University Medical Center · NLRadboud University Nijmegen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The infiltrative behavior of diffuse gliomas severely reduces therapeutic potential of surgical resection and radiotherapy, and urges for the identification of new drug-targets affecting glioma growth and migration. To address the potential role of protein tyrosine phosphatases (PTPs), we performed mRNA expression profiling for 91 of the 109 known human PTP genes on a series of clinical diffuse glioma samples of different grades and compared our findings with in silico knowledge from REMBRANDT and TCGA databases. Overall PTP family expression levels appeared independent of characteristic genetic aberrations associated with lower grade or high grade gliomas. Notably, seven PTP genes (DUSP26, MTMR4, PTEN, PTPRM, PTPRN2, PTPRT and PTPRZ1) were differentially expressed between grade II-III gliomas and (grade IV) glioblastomas. For DUSP26, PTEN, PTPRM and PTPRT, lower expression levels correlated with poor prognosis, and overexpression of DUSP26 or PTPRT in E98 glioblastoma cells reduced tumorigenicity. Our study represents the first in-depth analysis of PTP family expression in diffuse glioma subtypes and warrants further investigations into PTP-dependent signaling events as new entry points for improved therapy.

Indexed as

Brain NeoplasmsCell Line, TumorCell MovementCRISPR-Cas SystemsDisease ProgressionGene Expression ProfilingGene Expression Regulation, NeoplasticGliomaHEK293 CellsHumansImmunohistochemistryIsocitrate DehydrogenaseKaplan-Meier EstimateNeoplasm GradingProtein Tyrosine PhosphatasesPTEN PhosphohydrolaseIDH1 protein, humanIsocitrate DehydrogenaseProtein Tyrosine PhosphatasesPTEN PhosphohydrolasePTEN protein, humanRNA, MessengerAstrocytomaDUSP26EGFRGlioblastomaIDH1MalignancyMTMR4OligodendrogliomaPTENPTPPTPRMPTPRN2PTPRTPTPRZ1

Identifiers

PMID27586084
PMCPMC5009684
OpenAlexW2508910949

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.