Evidence map›Paper›PMID 27584618›Full record

ArticleJournal of visualized experiments : JoVE2016

A Cell-Free Assay Using Xenopus laevis Embryo Extracts to Study Mechanisms of Nuclear Size Regulation.

Lisa J Edens, Daniel L Levy

Abstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 12 citations in OpenAlex.

  1. Reconstitution of genome remodeling usingFrontiers in cell and developmental biology · 2026
    Review
  2. Article
  3. Nuclear growth and import can be uncoupled.Molecular biology of the cell · 2024
    Article
  4. Visualizing Nuclear Pore Complexes in Xenopus Egg Extracts.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  5. Article
  6. Emerin induces nuclear breakage inMolecular biology of the cell · 2018
    Article
  7. Chemical Screening Using Cell-FreeCold Spring Harbor protocols · 2018
    Article
  8. Nucleus Assembly and Import inCold Spring Harbor protocols · 2018
    Article
  9. Article
  10. Article
  11. Review
  12. Use of Xenopus cell-free extracts to study size regulation of subcellular structures.The International journal of developmental biology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Lisa J EdensDepartment of Molecular Biology, University of Wyoming.
Daniel L LevyDepartment of Molecular Biology, University of Wyoming; dlevy1@uwyo.edu.
University of Wyoming · US

Funding

Mechanisms of Steady-State Nuclear Size Regulation in XenopusR15GM106318 · NIGMS · UNIVERSITY OF WYOMING · PI LEVY, DANIEL LEON · 2013 to 2013
$311k
NIGMS NIH HHS R15 GM106318
6 · The paper itself

Abstract

A fundamental question in cell biology is how cell and organelle sizes are regulated. It has long been recognized that the size of the nucleus generally scales with the size of the cell, notably during embryogenesis when dramatic reductions in both cell and nuclear sizes occur. Mechanisms of nuclear size regulation are largely unknown and may be relevant to cancer where altered nuclear size is a key diagnostic and prognostic parameter. In vivo approaches to identifying nuclear size regulators are complicated by the essential and complex nature of nuclear function. The in vitro approach described here to study nuclear size control takes advantage of the normal reductions in nuclear size that occur during Xenopus laevis development. First, nuclei are assembled in X. laevis egg extract. Then, these nuclei are isolated and resuspended in cytoplasm from late stage embryos. After a 30 - 90 min incubation period, nuclear surface area decreases by 20 - 60%, providing a useful assay to identify cytoplasmic components present in late stage embryos that contribute to developmental nuclear size scaling. A major advantage of this approach is the relative facility with which the egg and embryo extracts can be biochemically manipulated, allowing for the identification of novel proteins and activities that regulate nuclear size. As with any in vitro approach, validation of results in an in vivo system is important, and microinjection of X. laevis embryos is particularly appropriate for these studies.

Indexed as

Cell-Free SystemAnimalsCell NucleusCell Nucleus ShapeCytoplasmEmbryo, NonmammalianFemaleMaleTissue ExtractsXenopus laevisTissue Extracts

Identifiers

PMID27584618
PMCPMC5091746
OpenAlexW2509846201

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.