Evidence map›Paper›PMID 27583642›Full record

ArticleNature protocols2016

A screening-based platform for the assessment of cellular respiration in Caenorhabditis elegans.

Mandy Koopman, Helen Michels, Beverley M Dancy, Rashmi Kamble, Laurent Mouchiroud, Johan Auwerx, Ellen A A Nollen, Riekelt H Houtkooper

Open access · greenAbstract read
In one paragraph

Article in Nature protocols, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

104 citing papers in PubMed, 191 citations in OpenAlex.

  1. Article
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  10. Nuclear MBL-1 modulates mitochondrial morphology through carnitine palmitoyltransferase inProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  11. Review
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  15. Tardigrade Dsup extendsScience advances · 2025
    Article
  16. SERCA Silencing Alleviates AßInternational journal of molecular sciences · 2025
    Article
  17. Article
  18. Review
  19. Article
  20. Article

44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Mandy KoopmanLaboratory of Molecular Neurobiology of Ageing, European Research Institute for the Biology of Ageing, University Medical Center Groningen, University of Groningen, Groningen, the Netherlands.
Helen MichelsLaboratory of Molecular Neurobiology of Ageing, European Research Institute for the Biology of Ageing, University Medical Center Groningen, University of Groningen, Groningen, the Netherlands.
Beverley M DancyLaboratory of Cardiac Energetics, National Heart, Lung and Blood Institute, Bethesda, Maryland, USA.ORCID 0000-0002-0896-6024
Rashmi KambleLaboratory Genetic Metabolic Diseases, Academic Medical Center, Amsterdam, the Netherlands.
Laurent MouchiroudLaboratory of Integrative and Systems Physiology, Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland.
Johan AuwerxLaboratory of Integrative and Systems Physiology, Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland.
Ellen A A NollenLaboratory of Molecular Neurobiology of Ageing, European Research Institute for the Biology of Ageing, University Medical Center Groningen, University of Groningen, Groningen, the Netherlands.
Riekelt H HoutkooperLaboratory Genetic Metabolic Diseases, Academic Medical Center, Amsterdam, the Netherlands.ORCID 0000-0001-9961-0842
University Medical Center Groningen · NLAmsterdam UMC Location University of Amsterdam · NLÉcole Polytechnique Fédérale de Lausanne · CHNational Heart Lung and Blood Institute · US

Funding

European Research Council 281622European Research Council 638290
6 · The paper itself

Abstract

Mitochondrial dysfunction is at the core of many diseases ranging from inherited metabolic diseases to common conditions that are associated with aging. Although associations between aging and mitochondrial function have been identified using mammalian models, much of the mechanistic insight has emerged from Caenorhabditis elegans. Mitochondrial respiration is recognized as an indicator of mitochondrial health. The Seahorse XF96 respirometer represents the state-of-the-art platform for assessing respiration in cells, and we adapted the technique for applications involving C. elegans. Here we provide a detailed protocol to optimize and measure respiration in C. elegans with the XF96 respirometer, including the interpretation of parameters and results. The protocol takes ∼2 d to complete, excluding the time spent culturing C. elegans, and it includes (i) the preparation of C. elegans samples, (ii) selection and loading of compounds to be injected, (iii) preparation and execution of a run with the XF96 respirometer and (iv) postexperimental data analysis, including normalization. In addition, we compare our XF96 application with other existing techniques, including the eight-well Seahorse XFp. The main benefits of the XF96 include the limited number of worms required and the high throughput capacity due to the 96-well format.

Indexed as

AnimalsBiochemistryCaenorhabditis elegansCell RespirationEquipment DesignMitochondriaOxygen Consumption

Identifiers

PMID27583642
PMCPMC5040492
OpenAlexW2509871258

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.