ReviewFrontiers in plant science2016
Association Analysis in Rice: From Application to Utilization.
Review in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.
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Who cites it
17 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Genome-wide lncRNAs identification and association analysis for cold-responsive genes at the booting stage in rice (Oryza sativa L.).The plant genome · 2020Pooled it
- Identification of significant SNPs and candidate loci for blast disease resistance via GWAS and population structure analysis in ARC panel ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024Article
- Discovering New QTNs and Candidate Genes Associated with Rice-Grain-Related Traits within a Collection of Northeast Core Set and Rice Landraces.Plants (Basel, Switzerland) · 2024Article
- Article
- Genotyping-by-Sequencing Based Investigation of Population Structure and Genome Wide Association Studies for Seven Agronomically Important Traits in a Set of 346 Oryza rufipogon Accessions.Rice (New York, N.Y.) · 2022Article
- Unraveling the genomic regions controlling the seed vigour index, root growth parameters and germination per cent in rice.PloS one · 2022Article
- Stable and Novel Quantitative Trait Loci (QTL) Confer Narrow Root Cone Angle in an Aerobic Rice (Oryza sativa L.) Production System.Rice (New York, N.Y.) · 2021Article
- Association of molecular markers with physio-biochemical traits related to seed vigour in rice.Physiology and molecular biology of plants : an international journal of functional plant biology · 2020Article
- Identification of QTLs for high grain yield and component traits in new plant types of rice.PloS one · 2020Article
- Genome-wide association study of important agronomic traits within a core collection of rice (Oryza sativa L.).BMC plant biology · 2019Article
- Genetic diversity, linkage disequilibrium, and population structure in a panel of Brazilian rice accessions.Journal of applied genetics · 2019Article
- Association Study Reveals Genetic Loci Responsible for Arsenic, Cadmium and Lead Accumulation in Rice Grain in Contaminated Farmlands.Frontiers in plant science · 2019Article
- Superior adaptation of aerobic rice under drought stress in Iran and validation test of linked SSR markers to major QTLs by MLM analysis across two years.Molecular biology reports · 2018Article
- Genome-wide association mapping for root cone angle in rice.Rice (New York, N.Y.) · 2017Article
- Footprints of domestication revealed by RAD-tag resequencing in loquat: SNP data reveals a non-significant domestication bottleneck and a single domestication event.BMC genomics · 2017Article
- Genome wide association analysis of cold tolerance at germination in temperate japonica rice (Oryza sativa L.) varieties.PloS one · 2017Article
- Association Analysis of Markers Derived from Starch Biosynthesis Related Genes with Starch Physicochemical Properties in the USDA Rice Mini-Core Collection.Frontiers in plant science · 2017Article
Corrections and comments
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Association analysis based on linkage disequilibrium (LD) is an efficient way to dissect complex traits and to identify gene functions in rice. Although association analysis is an effective way to construct fine maps for quantitative traits, there are a few issues which need to be addressed. In this review, we will first summarize type, structure, and LD level of populations used for association analysis of rice, and then discuss the genotyping methods and statistical approaches used for association analysis in rice. Moreover, we will review current shortcomings and benefits of association analysis as well as specific types of future research to overcome these shortcomings. Furthermore, we will analyze the reasons for the underutilization of the results within association analysis in rice breeding.
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