Evidence map›Paper›PMID 27582638›Full record

ArticleJournal of biomolecular techniques : JBT2016

Resolving Isomeric Glycopeptide Glycoforms with Hydrophilic Interaction Chromatography (HILIC).

Yining Huang, Yongxin Nie, Barry Boyes, Ron Orlando

Abstract read
In one paragraph

Article in Journal of biomolecular techniques : JBT, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Towards structure-focused glycoproteomics.Biochemical Society transactions · 2021
    Review
  18. Article
  19. State-of-the-Art Glycomics Technologies in Glycobiotechnology.Advances in biochemical engineering/biotechnology · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Yining HuangComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, USA;
Yongxin NieCollege of Life Science, Shandong Agricultural University, Taian, Shandong Province, P.R. China; and.
Barry BoyesComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, USA;; Advanced Materials Technology, Incorporated, Wilmington, Delaware 19810, USA.
Ron OrlandoComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, USA;

Funding

Novel Materials and Methods for Separations of Glycopeptides and GlycansR44GM093747 · NIGMS · ADVANCED MATERIALS TECHNOLOGY, INC. · PI BOYES, BARRY E · 2013 to 2015
$1.2M
Development of Isotopically Labeled Glycoproteins for use as Internal StandardsR42GM113666 · NIGMS · GLYCOSCIENTIFIC, LLC · PI ORLANDO, RON · 2020 to 2021
$697k
Development of Isotopically Labeled Glycoproteins for use as Internal StandardsR41GM113666 · NIGMS · GLYCOSCIENTIFIC, LLC · PI ORLANDO, RON · 2015 to 2015
$270k
Novel Materials and Methods for Separations of Glycopeptides and GlycansR43GM093747 · NIGMS · ADVANCED MATERIALS TECHNOLOGY, INC. · PI BOYES, BARRY E · 2011 to 2011
$200k
NIGMS NIH HHS R41 GM113666NIGMS NIH HHS R42 GM113666NIGMS NIH HHS R43 GM093747NIGMS NIH HHS R44 GM093747
6 · The paper itself

Abstract

The ability to resolve glycans while attached to tryptic peptides would greatly facilitate glycoproteomics, as this would enable site-specific glycan characterization. Peptide/glycopeptide separations are typically performed using reversed-phase liquid chromatography (RPLC), where retention is driven by hydrophobic interaction. As the hydrophilic glycans do not interact significantly with the RPLC stationary phase, it is difficult to resolve glycopeptides that differ only in their glycan structure, even when these differences are large. Alternatively, glycans interact extensively with the stationary phases used in hydrophilic interaction chromatography (HILIC), and consequently, differences in glycan structure have profound chromatographic shifts in this chromatographic mode. Here, we evaluate HILIC for the separation of isomeric glycopeptide mixtures that have the same peptide backbone but isomeric glycans. Hydrophilic functional groups on both the peptide and the glycan interact with the HILIC stationary phase, and thus, changes to either of these moieties can alter the chromatographic behavior of a glycopeptide. The interactive processes permit glycopeptides to be resolved from each other based on differences in their amino acid sequences and/or their attached glycans. The separations of glycans in HILIC are sufficient to permit resolution of isomeric N-glycan structures, such as sialylated N-glycan isomers differing in α2-3 and α2-6 linkages, while these glycans remain attached to peptides.

Indexed as

Amino Acid SequenceAnimalsCarbohydrate ConformationCarbohydrate SequenceCattleChromatography, GelChromatography, Reverse-PhaseFetuinsGlycopeptidesHumansHydrophobic and Hydrophilic InteractionsPolysaccharidesProtein BindingSensitivity and SpecificityFetuinsGlycopeptidesPolysaccharidesFetuinHILICIgGsIsomeric Separation

Identifiers

PMID27582638
PMCPMC4972402

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.