Evidence map›Paper›PMID 27582315›Full record

ArticleScientific reports2016

Discover the network underlying the connections between aging and age-related diseases.

Jialiang Yang, Tao Huang, Won-Min Song, Francesca Petralia, Charles V Mobbs, Bin Zhang, Yong Zhao, Eric E Schadt, Jun Zhu, Zhidong Tu

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Jialiang YangInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, NY, 10029, USA.
Tao HuangInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, NY, 10029, USA.
Won-Min SongInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, NY, 10029, USA.
Francesca PetraliaInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, NY, 10029, USA.
Charles V MobbsDepartment of Neuroscience, Icahn School of Medicine at Mount Sinai, NY, 10029, USA.
Bin ZhangInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, NY, 10029, USA.
Yong ZhaoInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, NY, 10029, USA.
Eric E SchadtInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, NY, 10029, USA.
Jun ZhuInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, NY, 10029, USA.
Zhidong TuInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, NY, 10029, USA.

Funding

Translational Research CoreP30DK020541 · NIDDK · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI STREAMSON C CHUA · 2015 to 2026
$27.7M
Integrative Network Biology Approaches to Identify, Characterize and Validate Molecular Subtypes in Alzheimer's DiseaseU01AG046170 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI WANG, MINGHUI, ZHANG, BIN · 2013 to 2022
$26.0M
Transforming Genomics with 5 PB Big Omics Data Engine Cray CS300-AC SupercomputerS10OD018522 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2014 to 2014
$1.9M
Developing methods for curating multi-omics dataU01HG008451 · NHGRI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI ZHU, JUN · 2015 to 2017
$1.5M
NHGRI NIH HHS U01 HG008451NIA NIH HHS U01 AG046170NIDDK NIH HHS P30 DK020541NIH HHS S10 OD018522
6 · The paper itself

Abstract

Although our knowledge of aging has greatly expanded in the past decades, it remains elusive why and how aging contributes to the development of age-related diseases (ARDs). In particular, a global mechanistic understanding of the connections between aging and ARDs is yet to be established. We rely on a network modelling named "GeroNet" to study the connections between aging and more than a hundred diseases. By evaluating topological connections between aging genes and disease genes in over three thousand subnetworks corresponding to various biological processes, we show that aging has stronger connections with ARD genes compared to non-ARD genes in subnetworks corresponding to "response to decreased oxygen levels", "insulin signalling pathway", "cell cycle", etc. Based on subnetwork connectivity, we can correctly "predict" if a disease is age-related and prioritize the biological processes that are involved in connecting to multiple ARDs. Using Alzheimer's disease (AD) as an example, GeroNet identifies meaningful genes that may play key roles in connecting aging and ARDs. The top modules identified by GeroNet in AD significantly overlap with modules identified from a large scale AD brain gene expression experiment, supporting that GeroNet indeed reveals the underlying biological processes involved in the disease.

Indexed as

Gene Regulatory NetworksAgingAlzheimer DiseaseBrainCell CycleGene Expression ProfilingGene OntologyHumansMolecular Sequence AnnotationSignal TransductionSystems Biology

Identifiers

PMID27582315
PMCPMC5007654

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.