Evidence map›Paper›PMID 27581498›Full record

ArticleScientific reports2016

Network analysis reveals common host protein/s modulating pathogenesis of neurotropic viruses.

Sourish Ghosh, Sriparna Mukherjee, Nabonita Sengupta, Arunava Roy, Dhritiman Dey, Surajit Chakraborty, Dhrubajyoti Chattopadhyay, Arpan Banerjee, Anirban Basu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.5field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Insights Into the Role of Mitochondria in Vascular Calcification.Frontiers in cardiovascular medicine · 2022
    Review
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Sourish GhoshNational Brain Research Centre, Manesar, Haryana-122051, India.
Sriparna MukherjeeNational Brain Research Centre, Manesar, Haryana-122051, India.
Nabonita SenguptaNational Brain Research Centre, Manesar, Haryana-122051, India.
Arunava RoyDepartment of Biochemistry, University of Calcutta, Kolkata- 700019, India.
Dhritiman DeyDepartment of Biochemistry, University of Calcutta, Kolkata- 700019, India.
Surajit ChakrabortyNational Brain Research Centre, Manesar, Haryana-122051, India.
Dhrubajyoti ChattopadhyayDepartment of Biochemistry, University of Calcutta, Kolkata- 700019, India.
Arpan BanerjeeNational Brain Research Centre, Manesar, Haryana-122051, India.
Anirban BasuNational Brain Research Centre, Manesar, Haryana-122051, India.
National Brain Research Centre · INUniversity of Calcutta · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Network analysis through graph theory provides a quantitative approach to characterize specific proteins and their constituent assemblies that underlie host-pathogen interactions. In the present study, graph theory was used to analyze the interactome designed out of 50 differentially expressing proteins from proteomic analysis of Chandipura Virus (CHPV, Family: Rhabdoviridae) infected mouse brain tissue to identify the primary candidates for intervention. Using the measure of degree centrality, that quantifies the connectedness of a single protein within a milieu of several other interacting proteins, DJ-1 was selected for further molecular validation. To elucidate the generality of DJ-1's role in propagating infection its role was also monitored in another RNA virus, Japanese Encephalitis Virus (JEV, Family: Flaviviridae) infection. Concurrently, DJ-1 got over-expressed in response to reactive oxygen species (ROS) generation following viral infection which in the early phase of infection migrated to mitochondria to remove dysfunctional mitochondria through the process of mitophagy. DJ-1 was also observed to modulate the viral replication and interferon responses along with low-density lipoprotein (LDL) receptor expression in neurons. Collectively these evidences reveal a comprehensive role for DJ-1 in neurotropic virus infection in the brain.

Indexed as

Gene Regulatory NetworksAnimalsBrainCell Line, TumorComputational BiologyEncephalitis Virus, JapaneseFemaleGene Expression RegulationHost-Pathogen InteractionsMaleMiceMice, Inbred BALB CMitochondriaMitophagyNeuronsOxidative StressPARK7 protein, mouseProtein Deglycase DJ-1Reactive Oxygen SpeciesReceptors, LDL

Identifiers

PMID27581498
PMCPMC5007645
OpenAlexW2518616834

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.