Evidence map›Paper›PMID 27580945›Full record

ArticleBMC genomics2016

Genome-wide analysis of lectin receptor-like kinases in Populus.

Yongil Yang, Jessy Labbé, Wellington Muchero, Xiaohan Yang, Sara S Jawdy, Megan Kennedy, Jenifer Johnson, Avinash Sreedasyam, Jeremy Schmutz, Gerald A Tuskan and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 71 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. A lectin receptor-like kinase controls self-pollen recognition inProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  7. Genome-Wide Identification of the Lectin Receptor-like Kinase Gene Family inInternational journal of molecular sciences · 2024
    Article
  8. Structural and Phylogenetic In Silico Characterization ofInternational journal of molecular sciences · 2024
    Article
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  11. Review
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  15. Article
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  18. Article
  19. Transcriptomic Profiling ofJournal of fungi (Basel, Switzerland) · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Yongil YangBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Jessy LabbéBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Wellington MucheroBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Xiaohan YangBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Sara S JawdyBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Megan KennedyU.S. Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.
Jenifer JohnsonU.S. Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.
Avinash SreedasyamHudsonAlpha Institute for Biotechnology, Huntsville, AL, 35806, USA.
Jeremy SchmutzU.S. Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.
Gerald A TuskanBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Jin-Gui ChenBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA. chenj@ornl.gov.ORCID 0000-0002-1752-4201
Oak Ridge National Laboratory · USJoint Genome Institute · USHudsonAlpha Institute for Biotechnology · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundReceptor-like kinases (RLKs) belong to a large protein family with over 600 members in Arabidopsis and over 1000 in rice. Among RLKs, the lectin receptor-like kinases (LecRLKs) possess a characteristic extracellular carbohydrate-binding lectin domain and play important roles in plant development and innate immunity. There are 75 and 173 LecRLKs in Arabidopsis and rice, respectively. However, little is known about LecRLKs in perennial woody plants.

resultsHere we report the genome-wide analysis of classification, domain architecture and expression of LecRLKs in the perennial woody model plant Populus. We found that the LecRLK family has expanded in Populus to a total of 231, including 180 G-type, 50 L-type and 1 C-type LecRLKs. Expansion of the Populus LecRLKs (PtLecRLKs) occurred partially through tandem duplication. Based on domain architecture and orientation features, we classified PtLecRLKs into eight different classes. RNA-seq-based transcriptomics analysis revealed diverse expression patterns of PtLecRLK genes among leaves, stems, roots, buds and reproductive tissues and organs.

conclusionsThis study offers a comprehensive view of LecRLKs in the perennial woody model plant Populus and provides a foundation for functional characterization of this important family of receptor-like kinases.

Indexed as

Genome, PlantGenome-Wide Association StudyGenomicsAmino Acid MotifsArabidopsisChromosome MappingCluster AnalysisGene Expression Regulation, PlantPhylogenyPlant ProteinsPopulusProtein Interaction Domains and MotifsSequence Homology, Amino AcidTandem Repeat SequencesPlant ProteinsLectin domainLectin receptor-like kinase (LecRLK)Perennial woody plantPopulusReceptor like-kinase (RLK)Transmembrane kinase

Identifiers

PMID27580945
PMCPMC5007699
OpenAlexW2517628510

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.